View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_high_4 (Length: 403)
Name: NF1493_high_4
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 34219480 - 34219877
Alignment:
| Q |
6 |
aaggaatacttcaactcatattaaaagtatgtttaannnnnnnnnaagaaaatgtcatattatatagacatttgtttggaagtttatcaacactannnnn |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34219480 |
aaggaatacttcaactcatattaaaagtatgtttaatttttttttaagaaaatgtcatattatatagacatttgtttggaagtttatcaacactattttt |
34219579 |
T |
|
| Q |
106 |
nnagttttaacattcaaattcctaggtaaatggacaacccctaaaaatctggagttcatttggccataagtgagcaaaatttgactaacttcaatcaaga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34219580 |
ttagttttaacattcaaattcctaggtaaatggacaacccctaaaaatttgaagttcatttggccataagtgagcaaaatttgactaacttcaatcaaga |
34219679 |
T |
|
| Q |
206 |
tttgaacttaggtttgccaagtgattctcttatgattggattccatttaccacttgagttcaatcacttagctattaacacatctttaaatagactagat |
305 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
34219680 |
tttgaacttaggttcgccaactgattctcttatgattggagtccgttaaccacttgagttcaatcacttagttattaacacatctttaaataaactaggt |
34219779 |
T |
|
| Q |
306 |
ataacgcaattgatacaagattaaagtgtaagcatgtcgttatatcaactttttctttttaaatccacaatctacgtgagaacccttatggtattcca |
403 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34219780 |
ataacacaattgatacaagattaaagtgtaagcatgtcgttatatcaactttttctttttaaatccacaatccatgtgagaacccttatggtattcca |
34219877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University