View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_9 (Length: 383)
Name: NF1493_high_9
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 30420193 - 30419829
Alignment:
| Q |
1 |
gttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgataattttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30420193 |
gttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgataattttac |
30420094 |
T |
|
| Q |
101 |
gtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgttaaattcct |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30420093 |
gtcaagacaaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgttaaattcct |
30419994 |
T |
|
| Q |
201 |
acaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggctttggttataaaatttggattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30419993 |
acaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggctttggttataaaatttggattt |
30419894 |
T |
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| Q |
301 |
ggtattaaaggagctgctattgcaatttgtatctcaaattggcttaatgtggcaatgttggcaat |
365 |
Q |
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| T |
30419893 |
ggtattaaaggagctgctattgcaatctgtatctcaaattggcttaatgtggcaatgttggcaat |
30419829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 30381399 - 30381049
Alignment:
| Q |
1 |
gttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgataattttac |
100 |
Q |
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||||| ||||| ||||||||||| ||||||| |||||||||||||||||||| || ||| |||| | |||||||||| |||| |||||| | ||||||| |
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| T |
30381399 |
gttggcatatacacacaaagagccatgttggttaccacccttgttagtatacccttgtcaattatatgggcatacttagaacctattttggtgattttac |
30381300 |
T |
|
| Q |
101 |
gtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgttaaattcct |
200 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||| ||||||||||| | |
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| T |
30381299 |
atcaagaccaaactattgcagcacaagctcaattatttgctcgttactcaattcctagccttgctgccaatggccttcttaggtgcattgttaaattctt |
30381200 |
T |
|
| Q |
201 |
acaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggctttggttataaaatttggattt |
300 |
Q |
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||||| ||||| ||| ||||||| |||||| | ||||||||| |||||| ||| ||||||| ||||||||||| | ||||||||||| || || ||| |
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| T |
30381199 |
gcaaactcaaaacatagtttttcccatggtgttggctaatggaatcactaccttagtacatgtccttctatgttggacattggttataaatttagggttt |
30381100 |
T |
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| Q |
301 |
ggtattaaaggagctgctattgcaatttgtatctcaaattggcttaatgtg |
351 |
Q |
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||||| |||||||||||||||||| |||| || ||||||||| |||||||| |
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| T |
30381099 |
ggtatcaaaggagctgctattgcactttgcatatcaaattggtttaatgtg |
30381049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30437699 - 30437423
Alignment:
| Q |
1 |
gttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgataattttac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
30437699 |
gttggaatatatacacaaagggcaatgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttgataattttac |
30437600 |
T |
|
| Q |
101 |
gtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgttaaattcct |
200 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| | ||| || |||||||||| |
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| T |
30437599 |
atcaagacaaaactattgcaacacaagctcaactatttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattattaaattcct |
30437500 |
T |
|
| Q |
201 |
acaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttggg |
277 |
Q |
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||| |||||||| || ||||||| |||||||||||||||||| ||| |||||| ||||||||| || |||| |||| |
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| T |
30437499 |
acagacacaaaacattgtttttcctatggtgcttgctaatggattcattagcttaatacatgttattttatgctggg |
30437423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 30435226 - 30435137
Alignment:
| Q |
274 |
tgggctttggttataaaatttggatttggtattaaaggagctgctattgcaatttgtatctcaaattggcttaatgtggcaatgttggca |
363 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
30435226 |
tgggctttggttataaaatttggacttggtattaaaggagctgctattgcaatttgcatctcaaattggcttaatgtggtaatattggca |
30435137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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