View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1493_low_1 (Length: 746)

Name: NF1493_low_1
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1493_low_1
NF1493_low_1
[»] chr5 (6 HSPs)
chr5 (146-318)||(11336209-11336381)
chr5 (491-738)||(11335667-11335917)
chr5 (329-487)||(11335995-11336153)
chr5 (146-251)||(43379448-43379553)
chr5 (146-251)||(43378572-43378677)
chr5 (689-732)||(24136585-24136630)
[»] chr6 (4 HSPs)
chr6 (146-185)||(13208225-13208264)
chr6 (148-206)||(3163534-3163592)
chr6 (263-305)||(10740746-10740788)
chr6 (146-251)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (152-199)||(3466658-3466705)
chr2 (253-318)||(8985740-8985805)
chr2 (146-199)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (171-237)||(3582072-3582138)
[»] chr7 (2 HSPs)
chr7 (146-199)||(35752377-35752430)
chr7 (253-318)||(46964298-46964363)
[»] chr4 (1 HSPs)
chr4 (253-318)||(16869676-16869741)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 6e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 146 - 318
Target Start/End: Complemental strand, 11336381 - 11336209
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  11336381 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaagaaagat 11336282  T
Q  246 gaactcgtatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 318  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11336281 gaactcgtgtatttgtgttgtttacatggtatcaagagcatggtttgattcttcttaaattactcgtcgcttc 11336209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 491 - 738
Target Start/End: Complemental strand, 11335917 - 11335667
Alignment:
Q  491 cataattgggaatatatagaggaatcatattttgtttgtggattttggagtcagatttgcatccgattattctcctt---ttcattattcttttaattta 587  Q
    ||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||| ||||| ||||||||||| |||   |||||| |||||||||||||    
T  11335917 cataattgggaatatatggaggaattagattttgtttgtgggttttggagtcagacttgcagccgattattcttcttcttttcattgttcttttaattta 11335818  T
Q  588 atcaaggttggtggttctttttgcttgagttttatgtttgggctgatctccnnnnnnnggtttatttacttgagtctagtaatccgtttgtgagnnnnnn 687  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||| ||||||||||||||||||||||||          
T  11335817 atcaaggttggtggttctttttgcttgagttttatgtttgggccgatctcctttttttggtttatttacgtgagtctagtaatccgtttgtgagtttttt 11335718  T
Q  688 nagtcttcgtgtgtttatgtgtttgtgtttggttaattggttgttcatctc 738  Q
     ||||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  11335717 tagtcttcgtgtgtttctgtatttgtgtttggttaattggttgttcgtctc 11335667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 329 - 487
Target Start/End: Complemental strand, 11336153 - 11335995
Alignment:
Q  329 atctttatcttgattgaagactgattgtatttgttggttattgtgcattcgtcgctnnnnnnnttatttgactccgattgactctttgttgaaacactga 428  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||     
T  11336153 atctttattttgattgaagactgattatatttgttggttattgtgcattcgtcgctaaaaaaattatttgactccgattgactctttgttgaaacaatgt 11336054  T
Q  429 tgttggtggatttgaaattgccnnnnnnngttgtttgcttttatggctacatttggatt 487  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  11336053 tgttggtggatttgaaattgcctttttgtgttgtttgcttttatggctacatttggatt 11335995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 43379448 - 43379553
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 245  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||  |||| |||||||| |||| | ||||||  ||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 43379547  T
Q  246 gaactc 251  Q
    ||||||    
T  43379548 gaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 43378677 - 43378572
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 245  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | || ||  |||  |||||||| |||| | ||||||  ||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaagat 43378578  T
Q  246 gaactc 251  Q
    ||||||    
T  43378577 gaactc 43378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 732
Target Start/End: Original strand, 24136585 - 24136630
Alignment:
Q  689 agtcttcgtgtgttta--tgtgtttgtgtttggttaattggttgtt 732  Q
    |||||||||||||||   ||||||||||||||||||||||||||||    
T  24136585 agtcttcgtgtgtttcattgtgtttgtgtttggttaattggttgtt 24136630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 13208225 - 13208264
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcac 185  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  13208225 caaaccttttaatcccaacccttgcttttatttttgtcac 13208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 3163592 - 3163534
Alignment:
Q  148 aaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactg 206  Q
    |||||||| ||||||||||||| |||||| |||| ||||||||  ||||||| ||||||    
T  3163592 aaccttttgatcctaacccttggttttatttttgacacatgtcgcacatctataaactg 3163534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 10740746 - 10740788
Alignment:
Q  263 ttgtttacatggtatcaagagcatggtttgattcttcttgaat 305  Q
    ||||| |||||||||||||||||||||||||| || |||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaat 10740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 13207451 - 13207346
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 245  Q
    |||| |||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | |||||  |||  ||||| || |||| | ||||||  ||||||    
T  13207451 caaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagtaaagat 13207352  T
Q  246 gaactc 251  Q
    ||||||    
T  13207351 gaactc 13207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 3466705 - 3466658
Alignment:
Q  152 ttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 199  Q
    |||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  3466705 ttttaatcctaacccttgattttatttttgtcatatgtcacacatcta 3466658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 8985740 - 8985805
Alignment:
Q  253 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 318  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  8985740 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 8985805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 39062863 - 39062916
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 199  Q
    ||||||||||||||||| || ||| ||||||  ||| |||||||||||||||||    
T  39062863 caaaccttttaatcctagccattgattttattgttgccacatgtcatacatcta 39062916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 3582072 - 3582138
Alignment:
Q  171 ttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatgga 237  Q
    |||||| ||| |||||||||||||||||||||| | |||  ||| |||| |||||||||| ||||||    
T  3582072 ttttatttttctcacatgtcatacatctaaaaaatagacatggataaatagaggcttcctaaatgga 3582138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 35752430 - 35752377
Alignment:
Q  146 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 199  Q
    ||||||||||||||  |||| ||| |||||| |||| |||||||||||||||||    
T  35752430 caaaccttttaatcacaaccattgattttatttttgccacatgtcatacatcta 35752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 46964363 - 46964298
Alignment:
Q  253 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 318  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  46964363 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 46964298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 16869676 - 16869741
Alignment:
Q  253 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 318  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  16869676 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 16869741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University