View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_11 (Length: 362)
Name: NF1493_low_11
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 6128655 - 6128991
Alignment:
| Q |
15 |
taaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaa |
114 |
Q |
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| T |
6128655 |
taaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaa |
6128754 |
T |
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| Q |
115 |
taaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatcaggtatattgaaa |
214 |
Q |
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| T |
6128755 |
taaggaaataaccactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctctggcaaaaaggatatcaaatttcatcaggtatattgaaa |
6128854 |
T |
|
| Q |
215 |
ttttcctagcatttatttttgttttaaaagagttagttggaaaaatttctaaatacaagagaattaggaaattcttgatttgaatacgctttaacgtact |
314 |
Q |
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| T |
6128855 |
ttttcctagcatttatttttgtttt-aaagagttagttggaaaaatttctaaatac-agagaattaggaaattcttgatttgaatacgctttaatgtact |
6128952 |
T |
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| Q |
315 |
tcttccgtttcacaatacatatcgcttttgaagaataat |
353 |
Q |
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| T |
6128953 |
tcttccgtttcacaatacatgtcgcttttgaagaataat |
6128991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 34451153 - 34450965
Alignment:
| Q |
15 |
taaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaa |
114 |
Q |
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| T |
34451153 |
taaacttcattgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaa |
34451054 |
T |
|
| Q |
115 |
taaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatcag |
203 |
Q |
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| T |
34451053 |
taaggaaataaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacatttcatcag |
34450965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 34487944 - 34487778
Alignment:
| Q |
17 |
aacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaata |
116 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| | ||||| ||||||| |
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| T |
34487944 |
aacttcattgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattggaacaaatccacaatacttttaccaacaata |
34487845 |
T |
|
| Q |
117 |
aggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaa |
183 |
Q |
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| T |
34487844 |
aggaaataaccacaaaagaaggctcccttcacttccttgcattagcatttcgtttgcttaggcaaaa |
34487778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 34461917 - 34461733
Alignment:
| Q |
23 |
attgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaataaggaaa |
122 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||| ||| || |||| | |||||||||||| |
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| T |
34461917 |
attgactcattgcaacgtttgggaatatcttatcaatttgaacatgaaattgatgaagcgttagaacaaattcacaacaattttagtgacaataaggaaa |
34461818 |
T |
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| Q |
123 |
taactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatcaggtat |
207 |
Q |
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| || | | ||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||| || || |||||||| |
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| T |
34461817 |
tgacctcagaagaaggtgaccttcactttcttgcgttagtatttcgtttgcttaggcaaaaaggacatcacatgtcttcaggtat |
34461733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 34475693 - 34475534
Alignment:
| Q |
15 |
taaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaa |
114 |
Q |
| |
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||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| | ||||| ||||| |
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| T |
34475693 |
taaacttcattgattcattgcaacgtttgggaatatcttatcattttgaacttgaaattgatgaagcattggaacaaatccacaatacttttaccaacaa |
34475594 |
T |
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| Q |
115 |
taaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgct |
174 |
Q |
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| T |
34475593 |
taaggaaataaccacagaagaaggttcccttcacttccttgcattagcatttcgtttgct |
34475534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1595301 - 1595245
Alignment:
| Q |
23 |
attgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaa |
79 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1595301 |
attgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaa |
1595245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 1595193 - 1595126
Alignment:
| Q |
134 |
gaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatc |
201 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
1595193 |
gaaggtggccttcacttttgtgcattagcatttcgtttgcttaggcaaaaaggacatcacatttcatc |
1595126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 26628809 - 26628858
Alignment:
| Q |
304 |
tttaacgtacttcttccgtttcacaatacatatcgcttttgaagaataat |
353 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| |||||||| |
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| T |
26628809 |
tttaacgtactttctccgtttcacaatacatgttgcttttggagaataat |
26628858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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