View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_12 (Length: 360)
Name: NF1493_low_12
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 37431718 - 37431385
Alignment:
| Q |
6 |
aggagcacagattatgatacttggatttccatacacgtgagttttgtagataccatctctcccatatctaaaaaattaaaaccaaataatagtaagtaca |
105 |
Q |
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| T |
37431718 |
aggatcacaaattatgatacttggatttccacacacgtgagttttgtagataccatctctcccatatctaaaaaattaaaaccaaataatagtaagtaca |
37431619 |
T |
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| Q |
106 |
cgtgttttgttttttcttgagtaaattgtataattaaaatactatttatatatatagcacatgggnnnnnnnggtgagaaaacgaaagatacttgagaat |
205 |
Q |
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| T |
37431618 |
cgtggtttgatttttcttgagtaaattatataattaaaatactatttatatatatagcacaagggaaaaaaaggtgagaaaacgaaagatacttgagaat |
37431519 |
T |
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| Q |
206 |
aaggttggtggtgaatgaatcaggttggccagatgagaagtttttgttaaatgataataggttgccaataagtggccatcccatatcacctggaggcaaa |
305 |
Q |
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| T |
37431518 |
aaggttggtggtgaatgaatcaggttggccagatgagaagtttttgttaaatgataataggttgccaataagtggccatcccatatcacctggaggcaaa |
37431419 |
T |
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| Q |
306 |
gggtactctttgtttcttaatttgagatgatagt |
339 |
Q |
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| T |
37431418 |
gggtactctttgtttcttaatttgagatgatagt |
37431385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 11804922 - 11805050
Alignment:
| Q |
182 |
agaaaacgaaagatacttgagaataaggttggtggtgaatgaatcaggttggccagatgagaagtttttgttaaatgataataggttgccaataagtggc |
281 |
Q |
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| T |
11804922 |
agaaaaagaaagagacttggaaacaaggttggtgatgaatgaatcaggatgaccagatgagaaatctttaacaaaagctaacatgttgccaatgagaggc |
11805021 |
T |
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| Q |
282 |
catcccatatcacctggaggcaaagggta |
310 |
Q |
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| T |
11805022 |
catcccaaatgaccaggaggtagagggta |
11805050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 11819001 - 11819055
Alignment:
| Q |
270 |
ccaataagtggccatcccatatcacctggaggcaaagggtactctttgtttctta |
324 |
Q |
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| T |
11819001 |
ccaataagtggccatcccaaatgaccaggaggcagagggtactgtttctttctta |
11819055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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