View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_14 (Length: 351)
Name: NF1493_low_14
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 5673315 - 5673012
Alignment:
| Q |
40 |
accaaattgtaaattggaaatatgaacactcgttgtaaaacccacttcatagcctttaaataacctcacctctacagtaaaattcatcatcaaatttaac |
139 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
5673315 |
accaaattgtaaatgtgaaatatgaacacttgttgtaaaacccatttcatagcctttaaataacctcacctctaaagtaacattcatcatcaaatttaac |
5673216 |
T |
|
| Q |
140 |
gcttctacgacgattaaaaaagaaaagtagatagaggatcacctagtctcggtccccctctccaaattaaattcatatgctagacacccattgagaagga |
239 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5673215 |
ccttctacaacgattaaaaaagaaaagtagatagaggatcacctagtctcggtccccctctccaaattaaattcatatgttagacacccattgagaagga |
5673116 |
T |
|
| Q |
240 |
ccaaagtcgtagtagtagatacacctttaattttccaccaggccgatgcggactacgtcgatcatggagaatacttgatgtaaataatttagagaatatt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
5673115 |
ccaaagtcgtagtagtagatacacctttaattttccaccaggccgatgcgggctaggtcgatcatggagaatatttgatataaataatttagagaatatt |
5673016 |
T |
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| Q |
340 |
cttg |
343 |
Q |
| |
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|||| |
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| T |
5673015 |
cttg |
5673012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 5698367 - 5698064
Alignment:
| Q |
40 |
accaaattgtaaattggaaatatgaacactcgttgtaaaacccacttcatagcctttaaataacctcacctctacagtaaaattcatcatcaaatttaac |
139 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
5698367 |
accaaattgtaaatgtgaaatatgaacacttgttgtaaaacccatttcatagcctttaaataacctcacctctaaagtaacattcatcatcaaatttaac |
5698268 |
T |
|
| Q |
140 |
gcttctacgacgattaaaaaagaaaagtagatagaggatcacctagtctcggtccccctctccaaattaaattcatatgctagacacccattgagaagga |
239 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5698267 |
ccttctacaacgattaaaaaagaaaagtagatagaggatcacctagtctcggtccccctctccaaattaaattcatatgttagacacccattgagaagga |
5698168 |
T |
|
| Q |
240 |
ccaaagtcgtagtagtagatacacctttaattttccaccaggccgatgcggactacgtcgatcatggagaatacttgatgtaaataatttagagaatatt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
5698167 |
ccaaagtcgtagtagtagatacacctttaattttccaccaggccgatgcgggctaggtcgatcatggagaatatttgatataaataatttagagaatatt |
5698068 |
T |
|
| Q |
340 |
cttg |
343 |
Q |
| |
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|||| |
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|
| T |
5698067 |
cttg |
5698064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5673824 - 5673784
Alignment:
| Q |
1 |
ccagtcctttgttccccgtttctaaacattgagtatcccac |
41 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||| |
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| T |
5673824 |
ccagtcctttgttctccttttctaaacattgagtatcccac |
5673784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5698876 - 5698836
Alignment:
| Q |
1 |
ccagtcctttgttccccgtttctaaacattgagtatcccac |
41 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||| |
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| T |
5698876 |
ccagtcctttgttctccttttctaaacattgagtatcccac |
5698836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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