View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_17 (Length: 330)
Name: NF1493_low_17
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 43978468 - 43978725
Alignment:
| Q |
8 |
gataattcttagggttgtataagtttaacaacttgatagaacaagaaagaaggaataaacaggggaaataagccagaggtttttctgcactaaccgatta |
107 |
Q |
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| T |
43978468 |
gatacttcttagggttgtataagtttaacaacttgatagaacaagaaagaaggaataaacaggggaaataagccagaggtttttctgcactaaccgatta |
43978567 |
T |
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| Q |
108 |
ttccaataatggttcttattaaataagtgtcaaccatggctgcaaaattcaaagaagaagctgaagaaagacgatgtaaacaaatgaagaatgtttctcc |
207 |
Q |
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| T |
43978568 |
ttccaataatggttcttattaaataagtgtctaccatggctgcaaaattcaaagaagaagctgaagaaagacgatgtaaacaaatgaagaatgtttctcc |
43978667 |
T |
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| Q |
208 |
--nnnnnnnnnnnnncaaatgaagaatgcaaatgaaaattgatagctaaatatatata |
263 |
Q |
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| T |
43978668 |
aaaaaaaaaaaaaaacaaatgaagaatgcaaatgaaaattgatagctaaatatatata |
43978725 |
T |
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