View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1493_low_18 (Length: 318)

Name: NF1493_low_18
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1493_low_18
NF1493_low_18
[»] chr4 (5 HSPs)
chr4 (17-301)||(54261063-54261348)
chr4 (19-84)||(2996582-2996646)
chr4 (22-84)||(4798566-4798627)
chr4 (31-84)||(17822874-17822926)
chr4 (40-84)||(24169272-24169316)
[»] chr7 (6 HSPs)
chr7 (19-87)||(15740408-15740472)
chr7 (107-142)||(1423085-1423120)
chr7 (41-84)||(25596042-25596085)
chr7 (31-84)||(529384-529436)
chr7 (104-144)||(43328186-43328226)
chr7 (48-84)||(48917371-48917407)
[»] chr6 (7 HSPs)
chr6 (19-87)||(1575904-1575968)
chr6 (19-84)||(6647396-6647460)
chr6 (75-144)||(24745366-24745435)
chr6 (104-146)||(3171524-3171566)
chr6 (41-86)||(2455817-2455862)
chr6 (107-144)||(33416322-33416359)
chr6 (48-84)||(31812038-31812074)
[»] chr2 (7 HSPs)
chr2 (107-144)||(18962134-18962171)
chr2 (19-84)||(34652033-34652097)
chr2 (21-84)||(35379015-35379077)
chr2 (48-87)||(44443327-44443366)
chr2 (107-142)||(44606184-44606219)
chr2 (46-84)||(9556248-9556286)
chr2 (46-84)||(36863648-36863686)
[»] chr1 (6 HSPs)
chr1 (31-84)||(19389910-19389963)
chr1 (107-190)||(36070140-36070224)
chr1 (104-144)||(870982-871022)
chr1 (18-66)||(11695888-11695935)
chr1 (19-79)||(28689449-28689508)
chr1 (48-84)||(51929724-51929760)
[»] chr8 (7 HSPs)
chr8 (96-144)||(16162702-16162750)
chr8 (19-91)||(42215303-42215374)
chr8 (42-84)||(26473771-26473813)
chr8 (42-87)||(10075570-10075615)
chr8 (22-87)||(33714236-33714300)
chr8 (48-84)||(5069706-5069742)
chr8 (48-84)||(27028840-27028876)
[»] chr3 (7 HSPs)
chr3 (96-144)||(44014878-44014926)
chr3 (48-91)||(25453884-25453927)
chr3 (48-87)||(34924563-34924602)
chr3 (41-84)||(39602228-39602271)
chr3 (48-86)||(2825154-2825192)
chr3 (49-86)||(16790404-16790441)
chr3 (48-84)||(44747433-44747469)
[»] chr5 (4 HSPs)
chr5 (107-143)||(4855636-4855672)
chr5 (104-144)||(16889672-16889712)
chr5 (32-84)||(40731478-40731530)
chr5 (101-133)||(41830800-41830832)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 54261063 - 54261348
Alignment:
Q  17 atttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaataggttaaacgtaaacaatttaattttatctt 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54261063 atttatgacttgtccataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaataggttatacgtaaacaatttaattttatctt 54261162  T
Q  117 tt-gttatgaaaatagctaatacataagcgcataagttataattgcaaattaagctgtttatccagatagggcgtatatcttgtgttctcagtattcaaa 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54261163 tttgttatgaaaatagctaatacataagcgcataagttataattgcaaattaagctgtttatccatatagggcgtatatcttgtgttctcagtattcaaa 54261262  T
Q  216 gttcaattgtttactaatttataagagtaaaggaaattagcaaaagtttgaaagatcaaactcttaattacttgtttcgctctgtg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54261263 gttcaattgtttactaatttataagagtaaaggaaattagcaaaagtttgaaggatcaaactcttaattacttgtttcgctctgtg 54261348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 2996646 - 2996582
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||| ||| |||||||| ||||| |||||||||||||| ||| || |||||||||||||||||    
T  2996646 ttatgacatgtccataagct-tttttcaacttattttcatacgctctccaagatagcttatgaaaa 2996582  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 4798566 - 4798627
Alignment:
Q  22 tgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||| |||||||||||||||||  | ||||||| |||||||| || |||||||||||||||||    
T  4798566 tgacatgtacataagctgttttg-agcttatttgcataagctctccaagatagcttatgaaaa 4798627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 17822874 - 17822926
Alignment:
Q  31 cataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||| ||||||| |||||||||||||| | || |||||||||||||||||    
T  17822874 cataagct-ttttttagcttattttcataagttctccaagatagcttatgaaaa 17822926  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24169316 - 24169272
Alignment:
Q  40 ttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||| |||||||||||||||||| || |||||||||| ||||||    
T  24169316 tttttcaacttattttcataagctctccaagatagcttgtgaaaa 24169272  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 15740408 - 15740472
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaatag 87  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||   ||||||||||| ||||||||||||    
T  15740408 ttatgacatgttcataagctgtttt-taacttattttcataa---ttcaaagataggttatgaaaatag 15740472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 1423120 - 1423085
Alignment:
Q  107 attttatcttttgttatgaaaatagctaatacataa 142  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1423120 attttatcttttgttatgaaaatagcttatacataa 1423085  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 25596085 - 25596042
Alignment:
Q  41 tttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||| |||||||||||||||||| || |||||||||||||||||    
T  25596085 ttttcaacttattttcataagctctccaagatagcttatgaaaa 25596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 529436 - 529384
Alignment:
Q  31 cataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||  ||| |||||||||||||| || |||||||||||||||||    
T  529436 cataagctgttttc-aacatattttcataagctctccaagatagcttatgaaaa 529384  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 43328226 - 43328186
Alignment:
Q  104 ttaattttatcttttgttatgaaaatagctaatacataagc 144  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  43328226 ttaattttatctttggttatagaaatagctaatacataagc 43328186  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 48917371 - 48917407
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||||| || |||||||||||||||||    
T  48917371 cttattttcataagctctccaagatagcttatgaaaa 48917407  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1575968 - 1575904
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaatag 87  Q
    ||||||| ||| |||||||||||||| |||||||||||||||   ||||||||||| ||||||||||||    
T  1575968 ttatgacatgttcataagctgttttt-aacttattttcataa---ttcaaagataggttatgaaaatag 1575904  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 6647460 - 6647396
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||| ||| |||||| ||||||  |||||||||||||||||| || |||||||||||||||||    
T  6647460 ttatgacatgttcataagatgttttc-aacttattttcataagctctctaagatagcttatgaaaa 6647396  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 24745435 - 24745366
Alignment:
Q  75 cttatgaaaataggttaaacgtaaacaatttaattttatcttttgttatgaaaatagctaatacataagc 144  Q
    ||||||||||||| ||||||  ||||||||| ||||||||||||||||   |||||||| ||| ||||||    
T  24745435 cttatgaaaatagcttaaacaaaaacaattttattttatcttttgttacagaaatagcttatagataagc 24745366  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 3171524 - 3171566
Alignment:
Q  104 ttaattttatcttttgttatgaaaatagctaatacataagcgc 146  Q
    |||||||||||||||||||| ||||||||| || |||||||||    
T  3171524 ttaattttatcttttgttataaaaatagcttatgcataagcgc 3171566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 2455862 - 2455817
Alignment:
Q  41 tttttaacttattttcataagctttcaaagatagcttatgaaaata 86  Q
    |||| ||||||||| |||||||| || |||||||||||||||||||    
T  2455862 ttttcaacttatttccataagctctccaagatagcttatgaaaata 2455817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 33416359 - 33416322
Alignment:
Q  107 attttatcttttgttatgaaaatagctaatacataagc 144  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  33416359 attttatcttttgttataaaaatagcttatacataagc 33416322  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 31812038 - 31812074
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||||| || |||||||||||||||||    
T  31812038 cttattttcataagctctccaagatagcttatgaaaa 31812074  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 18962134 - 18962171
Alignment:
Q  107 attttatcttttgttatgaaaatagctaatacataagc 144  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18962134 attttatcttttgttataaaaatagctaatacataagc 18962171  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 34652033 - 34652097
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||| ||| |||||||||||||  ||||||||| |||||||| || |||||||||||||||||    
T  34652033 ttatgacatgtccataagctgttttc-aacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 35379015 - 35379077
Alignment:
Q  21 atgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||||| |||||| ||||||  | |||||||||||||||| || |||||||||||||||||    
T  35379015 atgacttgttcataagttgttttc-agcttattttcataagctctccaagatagcttatgaaaa 35379077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 44443366 - 44443327
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaatag 87  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  44443366 cttattttcatatgctctcaaagatagcttatgaaaatag 44443327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 44606184 - 44606219
Alignment:
Q  107 attttatcttttgttatgaaaatagctaatacataa 142  Q
    ||||||||||||||||||||||||||| ||||||||    
T  44606184 attttatcttttgttatgaaaatagcttatacataa 44606219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 9556286 - 9556248
Alignment:
Q  46 aacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  9556286 aacttattttcataagctttctaggatagcttatgaaaa 9556248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 36863648 - 36863686
Alignment:
Q  46 aacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||||||| || |||||||||||||||||    
T  36863648 aacttattttcataagctctccaagatagcttatgaaaa 36863686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 19389963 - 19389910
Alignment:
Q  31 cataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||| ||||||||| |||||||||| ||||| || |||||||||||||||||    
T  19389963 cataagttgttttttagcttattttcacaagctctccaagatagcttatgaaaa 19389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 36070224 - 36070140
Alignment:
Q  107 attttatcttttgttatgaaaatagctaatacataagcgcataagttataa-ttgcaaattaagctgtttatccagatagggcgt 190  Q
    ||||||||||||||||| ||||||||  |||||||||||| || | |||||  ||||||||| ||||||||| || | |||||||    
T  36070224 attttatcttttgttataaaaatagcccatacataagcgcttatgctataagctgcaaattaggctgtttatacaaacagggcgt 36070140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 871022 - 870982
Alignment:
Q  104 ttaattttatcttttgttatgaaaatagctaatacataagc 144  Q
    |||||||||||||||||||| ||||||| | ||||||||||    
T  871022 ttaattttatcttttgttataaaaatagtttatacataagc 870982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 11695935 - 11695888
Alignment:
Q  18 tttatgacttgtacataagctgttttttaacttattttcataagctttc 66  Q
    |||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  11695935 tttatgacatgtccataagctgttttc-aacttattttcataagctttc 11695888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28689449 - 28689508
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttat 79  Q
    ||||||| ||| |||||| ||||||  | ||||||||||||||||||| ||||||||||||    
T  28689449 ttatgacatgtccataagttgttttc-agcttattttcataagctttccaagatagcttat 28689508  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 51929724 - 51929760
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  51929724 cttatttacataagctttccaagatagcttatgaaaa 51929760  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 16162750 - 16162702
Alignment:
Q  96 taaacaatttaattttatcttttgttatgaaaatagctaatacataagc 144  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||||    
T  16162750 taaacaatttaatattatcttttgttatggaaatagcttctacataagc 16162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 42215303 - 42215374
Alignment:
Q  19 ttatgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaataggtta 91  Q
    ||||||||||| |||||||||||||  | ||||||| |||||||| || | |||||| |||||||||||||||    
T  42215303 ttatgacttgttcataagctgttttc-agcttatttacataagctctccaggatagcatatgaaaataggtta 42215374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 26473771 - 26473813
Alignment:
Q  42 ttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||||||||||| || | |||||||||||||||    
T  26473771 ttttaacttattttcataagctctctaggatagcttatgaaaa 26473813  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10075570 - 10075615
Alignment:
Q  42 ttttaacttattttcataagctttcaaagatagcttatgaaaatag 87  Q
    ||||| |||||||||||||||| || | ||||||||||||||||||    
T  10075570 ttttagcttattttcataagctctctaggatagcttatgaaaatag 10075615  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 33714236 - 33714300
Alignment:
Q  22 tgacttgtacataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaatag 87  Q
    |||||||| |||||||||||||  | |||||||| ||||||| ||  |||||||||||||||||||    
T  33714236 tgacttgttcataagctgttttc-agcttatttttataagctctcccagatagcttatgaaaatag 33714300  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 5069742 - 5069706
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  5069742 cttattttcataagctttcgaagatatcttatgaaaa 5069706  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 27028876 - 27028840
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||||| || |||||||||||||||||    
T  27028876 cttattttcataagctctccaagatagcttatgaaaa 27028840  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 44014878 - 44014926
Alignment:
Q  96 taaacaatttaattttatcttttgttatgaaaatagctaatacataagc 144  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||||    
T  44014878 taaacaatttaatattatcttttgttatggaaatagcttctacataagc 44014926  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 25453884 - 25453927
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaataggtta 91  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||    
T  25453884 cttattttcataagctttccaggatagtttatgaaaataggtta 25453927  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 34924563 - 34924602
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaatag 87  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  34924563 cttattttcataagctctctaagatagcttatgaaaatag 34924602  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 39602228 - 39602271
Alignment:
Q  41 tttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||| |||||||||||||||| | ||||||||||||||||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaa 39602271  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 2825192 - 2825154
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaata 86  Q
    |||||||||||||||| || |||||||||||||||||||    
T  2825192 cttattttcataagctctccaagatagcttatgaaaata 2825154  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 16790404 - 16790441
Alignment:
Q  49 ttattttcataagctttcaaagatagcttatgaaaata 86  Q
    ||||||||||||||| || |||||||||||||||||||    
T  16790404 ttattttcataagctatccaagatagcttatgaaaata 16790441  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 44747433 - 44747469
Alignment:
Q  48 cttattttcataagctttcaaagatagcttatgaaaa 84  Q
    |||||||||||||| |||| |||||||||||||||||    
T  44747433 cttattttcataagttttccaagatagcttatgaaaa 44747469  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 4855672 - 4855636
Alignment:
Q  107 attttatcttttgttatgaaaatagctaatacataag 143  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  4855672 attttattttttgttataaaaatagctaatacataag 4855636  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 16889712 - 16889672
Alignment:
Q  104 ttaattttatcttttgttatgaaaatagctaatacataagc 144  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  16889712 ttaagtttatcttttgttatggaaatagcttatacataagc 16889672  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 40731530 - 40731478
Alignment:
Q  32 ataagctgttttttaacttattttcataagctttcaaagatagcttatgaaaa 84  Q
    ||||| ||||||| | | |||||||||||||| |||| |||||||||||||||    
T  40731530 ataagttgtttttcagcatattttcataagctctcaaggatagcttatgaaaa 40731478  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 41830832 - 41830800
Alignment:
Q  101 aatttaattttatcttttgttatgaaaatagct 133  Q
    ||||| |||||||||||||||||||||||||||    
T  41830832 aatttgattttatcttttgttatgaaaatagct 41830800  T

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