View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_20 (Length: 310)
Name: NF1493_low_20
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 1500928 - 1500654
Alignment:
| Q |
18 |
cttcatcttcatcaccatattcacaattcttcaagctttcatcattctccaaactcacatcaccatcttcatcatcacttctcttccacagccaccacca |
117 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1500928 |
cttcatcttcatcaccatattcacagttcttcaacctttcatcattctccaaactcacatcaccatcttcatcatcacttctcttccacagccaccacca |
1500829 |
T |
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| Q |
118 |
tgttcatcatcaaacaaaacaacaaacttcaaaacctactacaaatttcaccattaaagcttacatggagaatccaaactcattttcaaatgttgttagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1500828 |
tgttcatcatcaaacaaaacaacaaacttcaaaacctactacaaatttcaccattaaagcttacatggagaatccaaactcattttcaaatgttgttagc |
1500729 |
T |
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| Q |
218 |
aaagttattggtgctcttcctgttgttggtcttttagctagaattatgagtgatgaaggtggtgttggtaatgat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1500728 |
aaagttattggtgctcttcctgttgttggtcttttagctagaattatgagtgatgaaggtggtgttggtaatgat |
1500654 |
T |
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