View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_24 (Length: 300)
Name: NF1493_low_24
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 1172310 - 1172039
Alignment:
| Q |
16 |
atggcaaaattctaacctttgaaaacttgaaaggaacattttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatgcaa |
115 |
Q |
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| T |
1172310 |
atggcaaaattctaacctttgaaaacttgaaaggaacattttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatgcaa |
1172211 |
T |
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| Q |
116 |
gtgatgatgtgaaatgaatctgattctacaatcaac----tttagaaacaacatatcctttgcaaattccaaccccttaggtaaagccaaaccctcagcc |
211 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
1172210 |
gtgatgatgttaaatgaatctgattctacaatcaacttaatttagaaacaacatatcctttgcaaattccaaccccttaagtaaagccaaaccttcagct |
1172111 |
T |
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| Q |
212 |
acatttgaatctggcagtgccaatatgcaccagcactgcgctgcaacaacgacaccttctgtgtctcggata |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
1172110 |
acatttgaatctggcagtgccaatatgcaccagcactgcgctgcaacaacgacgccttctgtgtttcggata |
1172039 |
T |
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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 14930437 - 14930531
Alignment:
| Q |
16 |
atggcaaaattctaacctttgaaaacttgaaaggaacattttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatg |
112 |
Q |
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| T |
14930437 |
atggcaaaatt--aacctttgaaaacttgaaatgaaccttttgcggtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatg |
14930531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 275
Target Start/End: Original strand, 24703845 - 24704063
Alignment:
| Q |
56 |
ttgcagtcttcaacgattgatcccaaataagagagttggcgttgattttcattgatgcaagtgatgatgtgaaatgaatctgattctacaatcaacttta |
155 |
Q |
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||||||||||| ||||||||||||||||| | ||||| ||| | | ||||||||| | ||||| | | | |||||||| | || ||||||| ||||| |
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| T |
24703845 |
ttgcagtcttccacgattgatcccaaatagaactgttggtgttaagtctcattgatggaggtgatcacattagatgaatctaactcaacaatcagcttta |
24703944 |
T |
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| Q |
156 |
gaaacaacatatcctttgcaaattccaaccccttaggtaaagccaaaccctcagccacatttgaatctggcagtgccaatatgcaccagcactgcgctgc |
255 |
Q |
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|||||||||||||||||||||||||||| |||||| | || ||||||| || |||| || ||| ||| || ||||||||||| ||||||| | |||| |
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| T |
24703945 |
gaaacaacatatcctttgcaaattccaatcccttaag-caatccaaaccttctgccatatctgactcttgcgacgccaatatgcaacagcacttcactgc |
24704043 |
T |
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| Q |
256 |
aacaacgacaccttctgtgt |
275 |
Q |
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|||||| | ||||||||||| |
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| T |
24704044 |
aacaaccataccttctgtgt |
24704063 |
T |
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