View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1493_low_28 (Length: 265)

Name: NF1493_low_28
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1493_low_28
NF1493_low_28
[»] chr5 (8 HSPs)
chr5 (1-96)||(11335599-11335695)
chr5 (174-253)||(11335151-11335230)
chr5 (174-240)||(11335202-11335269)
chr5 (174-243)||(11335120-11335192)
chr5 (208-241)||(11335312-11335345)
chr5 (174-226)||(11335289-11335341)
chr5 (1-73)||(24136608-24136679)
chr5 (182-229)||(9511903-9511953)
[»] chr2 (6 HSPs)
chr2 (192-241)||(29409358-29409407)
chr2 (192-240)||(38583917-38583965)
chr2 (192-241)||(8986315-8986364)
chr2 (181-231)||(8986342-8986394)
chr2 (192-241)||(8986463-8986512)
chr2 (204-241)||(38584023-38584060)
[»] chr6 (7 HSPs)
chr6 (1-73)||(21861816-21861888)
chr6 (180-231)||(22860895-22860946)
chr6 (1-73)||(9402984-9403056)
chr6 (180-229)||(18981357-18981407)
chr6 (206-240)||(22860737-22860771)
chr6 (192-241)||(22860868-22860918)
chr6 (1-73)||(13167201-13167273)
[»] chr7 (4 HSPs)
chr7 (204-241)||(26403160-26403197)
chr7 (181-231)||(46963711-46963763)
chr7 (192-241)||(46963741-46963790)
chr7 (197-241)||(46963590-46963634)
[»] chr4 (6 HSPs)
chr4 (179-227)||(16871166-16871216)
chr4 (206-240)||(16871155-16871189)
chr4 (1-34)||(16870265-16870298)
chr4 (192-241)||(16870846-16870895)
chr4 (181-231)||(16870873-16870925)
chr4 (192-241)||(16870994-16871043)
[»] chr3 (5 HSPs)
chr3 (192-237)||(42530833-42530879)
chr3 (207-241)||(50295873-50295907)
chr3 (197-229)||(42530805-42530837)
chr3 (1-61)||(50295315-50295375)
chr3 (180-223)||(50295884-50295928)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11335695 - 11335599
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgtttag-tcggttcgttttggtgcttca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| ||||    
T  11335695 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgctttggttcaacttgttttggtttgtttagtttggttcgttttggtgtttca 11335599  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 11335230 - 11335151
Alignment:
Q  174 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattgcattgcacttctcctcccctgatgat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11335230 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattgcattgcacttctcctccccttatgat 11335151  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 11335269 - 11335202
Alignment:
Q  174 ttctcctgattgattgctttgcacttctcacctt-ttgattcttctgattgattgcattgcacttctc 240  Q
    ||||||| |||||||||||||||||||||  ||| |||||||| |||||||||||| |||||||||||    
T  11335269 ttctccttattgattgctttgcacttctcctcttattgattctcctgattgattgctttgcacttctc 11335202  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 11335192 - 11335120
Alignment:
Q  174 ttctcctgattgattgctttgcacttctca---ccttttgattcttctgattgattgcattgcacttctcctc 243  Q
    |||| |||||||||||| |||||||||||    |||| ||||||||||||||||||||  |||||||||||||    
T  11335192 ttcttctgattgattgcattgcacttctcctccccttatgattcttctgattgattgccctgcacttctcctc 11335120  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 11335345 - 11335312
Alignment:
Q  208 ttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||||||||||||||||||||||||||    
T  11335345 ttgattcttctgattgattgcattgcacttctcc 11335312  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 11335341 - 11335289
Alignment:
Q  174 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgatt 226  Q
    |||| |||||||||||| ||||||||||| |||||| |||||| |||||||||    
T  11335341 ttcttctgattgattgcattgcacttctccccttttcattcttttgattgatt 11335289  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24136608 - 24136679
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 73  Q
    ||||||||||||||||||||||| |||| |||||| || | |||||||| ||||| ||||| |||||| ||||    
T  24136608 ttgtgtttggttaattggttgtttgtctatgtctgtct-tggttgctttggttcagcttgtcttggttcgttt 24136679  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 9511903 - 9511953
Alignment:
Q  182 attgattgctttgcacttctca---ccttttgattcttctgattgattgca 229  Q
    ||||||||| |||||||||| |   ||||||||||||||||||||||||||    
T  9511903 attgattgcattgcacttctgatccccttttgattcttctgattgattgca 9511953  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 29409407 - 29409358
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  29409407 ttgcacgtctcccctgttgattcttctgattgattgcattgcacttctcc 29409358  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 38583965 - 38583917
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctc 240  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  38583965 ttgcacttctccccctttgattcttctgattgattgtattgcacttctc 38583917  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 8986315 - 8986364
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  8986315 ttgcacttctcccctattggttcttccgattgattgcattgtacttctcc 8986364  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 8986342 - 8986394
Alignment:
Q  181 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 231  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  8986342 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 8986394  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 8986463 - 8986512
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||  ||| ||| |||||| |||||||||||||||||||||||    
T  8986463 ttgcacttctaccctattggttcttccgattgattgcattgcacttctcc 8986512  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 38584060 - 38584023
Alignment:
Q  204 ccttttgattcttctgattgattgcattgcacttctcc 241  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  38584060 ccttttgatttttctgagtgattgcattgcacttctcc 38584023  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21861816 - 21861888
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 73  Q
    |||||||||||||||||||||||||||| ||| || |||| |||||||| | ||| ||||| |||||| ||||    
T  21861816 ttgtgtttggttaattggttgttcgtctatgtatgtctctggttgctttggctcagcttgtcttggttcgttt 21861888  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 22860895 - 22860946
Alignment:
Q  180 tgattgattgctttgcacttctcaccttttgattcttctgattgattgcatt 231  Q
    ||||||||||| ||||||||||| ||||||| |||||| |||||||||||||    
T  22860895 tgattgattgcattgcacttctccccttttggttcttccgattgattgcatt 22860946  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9402984 - 9403056
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 73  Q
    |||||||||||||||||||||||| ||| ||| ||  ||  |||||||| ||||||||||| |||||| ||||    
T  9402984 ttgtgtttggttaattggttgttcctctttgtttgtttcgggttgctttggttcaacttgtcttggttcgttt 9403056  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 18981357 - 18981407
Alignment:
Q  180 tgattgattgctttgcacttct-caccttttgattcttctgattgattgca 229  Q
    ||||||||||| |||||||| | | ||||||||||||||||||||||||||    
T  18981357 tgattgattgcattgcactttttctccttttgattcttctgattgattgca 18981407  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 22860737 - 22860771
Alignment:
Q  206 ttttgattcttctgattgattgcattgcacttctc 240  Q
    |||||||||||||| ||||||||||||||||||||    
T  22860737 ttttgattcttctgtttgattgcattgcacttctc 22860771  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 22860868 - 22860918
Alignment:
Q  192 ttgcacttctcacctt-ttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||| || | ||||||||| ||||||||||||||||||||||||    
T  22860868 ttgcacttctccccctattgattcttttgattgattgcattgcacttctcc 22860918  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13167201 - 13167273
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 73  Q
    |||| ||||||||||||||||||||| | ||| || |||| |||||||| | ||| ||||| |||||| ||||    
T  13167201 ttgtatttggttaattggttgttcgtttatgtttgtctctggttgctttgggtcagcttgtcttggttcgttt 13167273  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 26403160 - 26403197
Alignment:
Q  204 ccttttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26403160 ccttttgattcttttgattgattgcattgcacttctcc 26403197  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 46963763 - 46963711
Alignment:
Q  181 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 231  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  46963763 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 46963711  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 46963790 - 46963741
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  46963790 ttgcacttctcccctattggttcttccgattgattgcattgtacttctcc 46963741  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 46963634 - 46963590
Alignment:
Q  197 cttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    |||||| ||| ||| |||||| |||||||||||||||||||||||    
T  46963634 cttctcccctattggttcttccgattgattgcattgcacttctcc 46963590  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 16871166 - 16871216
Alignment:
Q  179 ctgattgattgctttgcacttctcacc--ttttgattcttctgattgattg 227  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||||||||||    
T  16871166 ctgattgattgcattgcacttctctccccttttgattcttctgattgattg 16871216  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 16871155 - 16871189
Alignment:
Q  206 ttttgattcttctgattgattgcattgcacttctc 240  Q
    ||||||||| |||||||||||||||||||||||||    
T  16871155 ttttgattcgtctgattgattgcattgcacttctc 16871189  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 16870265 - 16870298
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtct 34  Q
    |||||||||||||||||||||||||||| |||||    
T  16870265 ttgtgtttggttaattggttgttcgtctatgtct 16870298  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 16870846 - 16870895
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  16870846 ttgcacttctcccctgttggttcttccgattgattgcattgtacttctcc 16870895  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 16870873 - 16870925
Alignment:
Q  181 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 231  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  16870873 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 16870925  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 16870994 - 16871043
Alignment:
Q  192 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 241  Q
    |||||||| || ||| ||| |||||| |||||||||||||||||||||||    
T  16870994 ttgcacttttcccctattggttcttccgattgattgcattgcacttctcc 16871043  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 42530833 - 42530879
Alignment:
Q  192 ttgcacttct-caccttttgattcttctgattgattgcattgcactt 237  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||    
T  42530833 ttgcacttcttccccttttgattcttctgattgattgcatttcactt 42530879  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 50295873 - 50295907
Alignment:
Q  207 tttgattcttctgattgattgcattgcacttctcc 241  Q
    |||||||||| ||||||||||||||||||||||||    
T  50295873 tttgattcttttgattgattgcattgcacttctcc 50295907  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 42530805 - 42530837
Alignment:
Q  197 cttctcaccttttgattcttctgattgattgca 229  Q
    |||||| ||||||||||||||||||||||||||    
T  42530805 cttctccccttttgattcttctgattgattgca 42530837  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 50295315 - 50295375
Alignment:
Q  1 ttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgt 61  Q
    ||||||||| ||||||||||||| |||| |||||| || | |||||||| ||||| |||||    
T  50295315 ttgtgtttgattaattggttgtttgtctatgtctgtctatggttgctttggttcagcttgt 50295375  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 50295884 - 50295928
Alignment:
Q  180 tgattgattgctttgcacttctcac-cttttgattcttctgattg 223  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||    
T  50295884 tgattgattgcattgcacttctccctcttttgattcttctgattg 50295928  T

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