View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_30 (Length: 259)
Name: NF1493_low_30
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 10935733 - 10935948
Alignment:
| Q |
27 |
atttgtggaataagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataatatttggttgatattgttattatttatttccgtttg |
126 |
Q |
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| T |
10935733 |
atttgtggaataagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataatgtttggttgatattgttattatttatctccgtgtg |
10935832 |
T |
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| Q |
127 |
tttgtcttggagggtgccatttattgttctgttatggcaaaagaaatttcactattccagttcgagtttactcattttctgatttaattttgttacatac |
226 |
Q |
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| T |
10935833 |
tttgtcttggagggtgccatttattgttctgttatggcaaaagaaatttcactattccagttcaagtttactcattttctgatttaattttgttacatac |
10935932 |
T |
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| Q |
227 |
tgggtttgataatgat |
242 |
Q |
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| T |
10935933 |
tgggtttgataatgat |
10935948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 10960880 - 10960998
Alignment:
| Q |
37 |
taagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataat-atttggtt-gatattgttattatttatttccgtttgtttgtctt |
134 |
Q |
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| T |
10960880 |
taagattttggtattttgaagagagagatgtagctgatccactcaatgagataaggatatgttttgttattgtaattatttatttccatttgtttgtttt |
10960979 |
T |
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| Q |
135 |
ggagggtgccatttattgt |
153 |
Q |
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| T |
10960980 |
ggagggtgccctttattgt |
10960998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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