View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_low_32 (Length: 253)
Name: NF1493_low_32
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45074889 - 45074650
Alignment:
| Q |
1 |
catgattttcctcttaacagtcaattgaatagtttcaaccaggactcgaatcaatgtcatgggaaaatgctgaaaacgaaatcaattacaaattctactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45074889 |
catgattttcctcttaacagtcaattgaatagtttcaaccaggactcgaatcaatgtcatgggaaaaagctgaaaacgaaatcaattacaaattctactg |
45074790 |
T |
|
| Q |
101 |
tgccatcttttgtttatcttcatctagcccatgattatgatgatcatgataagcttttcttttgtgatgaagagcaactttttctgcagaaagtaccttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45074789 |
tgccatcttttgtttatcttcatctagcccatgattatgatgatcatgataagcttttcttttgtgatgaagagcaactttttctgcagaaagtaccttg |
45074690 |
T |
|
| Q |
201 |
gttaatcatgaaaacagataattattttgtcccatctctg |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45074689 |
gttaattatgaaaacagataattattttgtcccatctctg |
45074650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 13801964 - 13802194
Alignment:
| Q |
3 |
tgattttcctcttaacagtcaattgaatagtttcaaccaggactcgaatcaatgtcatgggaaaatgctgaaaacgaaatcaattacaaattctactgtg |
102 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||| || ||| | || ||||||||||||| |||||||| |||| |||||| | || ||||| | || |
|
|
| T |
13801964 |
tgatttccctctcaacagtcaatttcttagtttgaatcagaaatctgatcaatgtcatggaaaaatgctaaaaaataaatcagtcacgaattccaaagta |
13802063 |
T |
|
| Q |
103 |
ccatcttttgtttatcttcatctagcccatgattatgatgatcatgataagcttttcttttgtgatgaagagcaactttttctgcagaaagtaccttggt |
202 |
Q |
| |
|
|| |||| ||| || |||||| | || ||||||||||||||| | |||||||||||||| || |||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
13802064 |
ccttcttctgtctaccttcatttggcgcatgattatgatgatgaggataagcttttcttctgcgatgaagaacaacaatttctgcagaaagttccttggt |
13802163 |
T |
|
| Q |
203 |
taatcatgaaaacagataattattttgtccc |
233 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| |
|
|
| T |
13802164 |
taatgatgaaaacagataattactttatccc |
13802194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University