View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_34 (Length: 250)
Name: NF1493_low_34
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6130040 - 6130274
Alignment:
| Q |
1 |
aaattgaagggaaaacaaatcatgtttattggagattcagtgagtctaaaccaatggcagtcacttatatgcttgcttcattctgctgtacctaaagcta |
100 |
Q |
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| T |
6130040 |
aaattgaagggaaaacaaatcatgtttattggagattcagtgagtctaaaccaatggcagtcacttatatgcttgcttcattctgctgtacctaaagcta |
6130139 |
T |
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| Q |
101 |
atataatacaacagggtggtgatcccataaccaattacaccttcaaggtgagtgagatatttgataacaaaccatctttcaaaattgttacnnnnnnntt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
6130140 |
atataatacaacagggtggtgatcccattaccaattacaccttcaaggtgagtgagatatttgatcacaaaccatctttcaaaattgttacaaaaaaatt |
6130239 |
T |
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| Q |
201 |
gtannnnnnngttacaatttcaattacttttgcag |
235 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
6130240 |
gtatttttttgttacaatttcaattacttttgcag |
6130274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6136893 - 6137020
Alignment:
| Q |
1 |
aaattgaagggaaaacaaatcatgtttattggagattcagtgagtctaaaccaatggcagtcacttatatgcttgcttcattctgctgtacctaaagcta |
100 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||| | |||| ||||||| |||| |||||| |||| |||||||||||||||||||| |||||| |
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| T |
6136893 |
aaattgaaggggaaacaaataatgtttattggagattcaataagtcgaaaccaaaggcaatcacttgtatgtttgcttcattctgctgtaccacaagcta |
6136992 |
T |
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| Q |
101 |
atataatacaacagggtggtgatcccat |
128 |
Q |
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| T |
6136993 |
gagtaataaaacagggttctgatcccat |
6137020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 13285708 - 13285581
Alignment:
| Q |
1 |
aaattgaagggaaaacaaatcatgtttattggagattcagtgagtctaaaccaatggcagtcacttatatgcttgcttcattctgctgtacctaaagcta |
100 |
Q |
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||||| ||||| ||||||||||||||||||||||||||| | |||| ||||||| |||| |||||| |||| |||||||||||||||||||| |||||| |
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| T |
13285708 |
aaatttaaggggaaacaaatcatgtttattggagattcaataagtcgaaaccaaaggcaatcacttgtatgtttgcttcattctgctgtaccacaagcta |
13285609 |
T |
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| Q |
101 |
atataatacaacagggtggtgatcccat |
128 |
Q |
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||||| |||||||| ||||||||| |
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| T |
13285608 |
gagtaataaaacagggttctgatcccat |
13285581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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