View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_low_35 (Length: 248)
Name: NF1493_low_35
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_35 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3214137 - 3214267
Alignment:
| Q |
1 |
aagaaagctcaagtgtgtgattattagggtgacctaatccaagtgccgcaaatattgtgaagtaaaagaagaatgattattacaagagctagaactagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3214137 |
aagaaagctcaagtgtgtgattattagggtgacctaatccaagtgccgcaaatattgtgaagtaaaagaagaatgattattacaagagctagaactaatg |
3214236 |
T |
|
| Q |
101 |
tttatagtgcaaacagacgcattatttggaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3214237 |
tttatagtgcaaacagacgcattatttggaa |
3214267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 3214312 - 3214425
Alignment:
| Q |
128 |
ggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3214312 |
ggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtggtcagaatgaaactcaaaaa |
3214411 |
T |
|
| Q |
228 |
agacagtattatct |
241 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
3214412 |
agacagaattatct |
3214425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 39580173 - 39580066
Alignment:
| Q |
126 |
ttggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaa |
225 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||||| ||||||| |||||||||||||| |||||||||||| | ||||||| ||| |||||||| |
|
|
| T |
39580173 |
ttggaaaagtatagagaccatcagaacccactttgccatgcggaagaacctctttagtggcctgggatttgacaacacaatgatcagcatggaactcaaa |
39580074 |
T |
|
| Q |
226 |
aaagacag |
233 |
Q |
| |
|
|||||||| |
|
|
| T |
39580073 |
aaagacag |
39580066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 39580343 - 39580237
Alignment:
| Q |
12 |
agtgtgtgattattagggtgacctaatcc-aagtgccgcaaatattgtgaagtaaaagaagaatgattattacaagagctagaactagtgtttatagtgc |
110 |
Q |
| |
|
||||||||| ||||||| || ||||| | || |||| ||||||||||| |||||| || || ||||||||||||| |||||||||||| || | ||||| |
|
|
| T |
39580343 |
agtgtgtgaatattaggatgtcctaaccttaaatgcctcaaatattgtgtagtaaaggaggactgattattacaagtgctagaactagtattaagagtgc |
39580244 |
T |
|
| Q |
111 |
aaacaga |
117 |
Q |
| |
|
||||||| |
|
|
| T |
39580243 |
aaacaga |
39580237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 32459576 - 32459683
Alignment:
| Q |
126 |
ttggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaa |
225 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | ||||| || ||| ||||||||||||| |||| | ||||||||| |||||| ||||| |
|
|
| T |
32459576 |
ttggaaaggtatagagaccatctggaccaactttgccatgcagcagaacatccttattggcctgagatttcacaagacagtgatcagcatgaaattcaaa |
32459675 |
T |
|
| Q |
226 |
aaagacag |
233 |
Q |
| |
|
||| |||| |
|
|
| T |
32459676 |
aaacacag |
32459683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 25335 - 25222
Alignment:
| Q |
128 |
ggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaaaa |
227 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| | | ||||||||||||||| |||||||||| |||||| | | |||| |||||| ||||||| |
|
|
| T |
25335 |
ggaaaggtgtaaagaccatcaggaccaacactgccacgaaggagaacttctttagtgtcctgagatttaacaacacaatagtcagcatgaaattcaaaaa |
25236 |
T |
|
| Q |
228 |
agacagtattatct |
241 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
25235 |
atacagtattatct |
25222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 36398548 - 36398661
Alignment:
| Q |
128 |
ggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaaaa |
227 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| | | ||||||||||||||| |||||||||| |||||| | | |||| |||||| ||||||| |
|
|
| T |
36398548 |
ggaaaggtgtaaagaccatcaggaccaacactgccacgaaggagaacttctttagtgtcctgagatttaacaacacaatagtcagcatgaaattcaaaaa |
36398647 |
T |
|
| Q |
228 |
agacagtattatct |
241 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
36398648 |
atacagtattatct |
36398661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 52664953 - 52665066
Alignment:
| Q |
128 |
ggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaaaa |
227 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| | | ||||||||||||||| |||||||||| |||||| | | |||| |||||| ||||||| |
|
|
| T |
52664953 |
ggaaaggtgtaaagaccatcaggaccaacactgccacgaaggagaacttctttagtgtcctgagatttaacaacacaatagtcagcatgaaattcaaaaa |
52665052 |
T |
|
| Q |
228 |
agacagtattatct |
241 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
52665053 |
aggcagtgttatct |
52665066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 24788396 - 24788509
Alignment:
| Q |
128 |
ggaaaggtatagagaccatcaggaccaactttgccatgctgaagaacttctttagtggcctgagatttgacaacaaagtgatcagaatgaaactcaaaaa |
227 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| | | ||||||||||||||| |||||||||| |||||| | | |||| |||||| ||||||| |
|
|
| T |
24788396 |
ggaaaggtgtaaaggccatcaggaccaacactgccacgaaggagaacttctttagtgtcctgagatttaacaacacaatagtcagcatgaaattcaaaaa |
24788495 |
T |
|
| Q |
228 |
agacagtattatct |
241 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
24788496 |
atacagtgttatct |
24788509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University