View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_36 (Length: 246)
Name: NF1493_low_36
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 32825558 - 32825778
Alignment:
| Q |
10 |
attattcttgtgtacatgacacaattcttgagcatatctttcgtggaactgcctttgagaatgtgtatatagaggtatatatagaatacattttagcagc |
109 |
Q |
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| T |
32825558 |
attattcttgtgtacatgacacaattcttgagcatatctttcgtggaactgcctttgagaatgtgtatatagagatatatatagaatacattttagcagc |
32825657 |
T |
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| Q |
110 |
aacacatacttacttgttaaacaaagaccctcttgattttgatatctttatgaattctctaggaagtaaatctaaattggcttcccatagtctttacgac |
209 |
Q |
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| T |
32825658 |
aacccatacttacttgttaaacaaagaccctcttgattttgatatctttatgaattctctaggaagtgaatctaaattggcttcccatagtctttacgac |
32825757 |
T |
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| Q |
210 |
acaaaagacattgactaaatc |
230 |
Q |
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||||||||||||||||||||| |
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| T |
32825758 |
acaaaagacattgactaaatc |
32825778 |
T |
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