View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_38 (Length: 245)
Name: NF1493_low_38
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_38 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2803217 - 2802988
Alignment:
| Q |
1 |
tgatgtccaactcacttgtcttgtggctctgggccaaatgtgggtgaatggtgatcccctgggctctcctcgtggcccaacagtggtatcagagtcgtgg |
100 |
Q |
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| T |
2803217 |
tgatgtccaactcacttgtcttgtggctctgggccaaatgtgggtgaatggtgatcccccgggctctcctcgtggcccaacagtggtatcagagtcgtgg |
2803118 |
T |
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| Q |
101 |
ttcgacgaagagttcaagggtgatcctgaccaaaggttttggattaaattttggtgttcaactcacttatatggttgttctgggaccaatgtggatgatc |
200 |
Q |
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| T |
2803117 |
ttcgacgaagagttcaagggtgatcctgaccaaaggttttggattaaagtttggtgttcaactcacttatatggttgttctgggaccaatgtggatgatt |
2803018 |
T |
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| Q |
201 |
gacttccctcatgatccaacaggtagaaat |
230 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
2803017 |
gacttccctcgtgatccaacaggtagaaat |
2802988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 30313329 - 30313391
Alignment:
| Q |
53 |
gatcccctgggctctcctcgtggcccaacagtggtatcagagtcgtggttcgacgaagagttc |
115 |
Q |
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| T |
30313329 |
gatcccccgggctctcctcgtgacccaacagtggtatcagagtcgtggtttgacgaatagttc |
30313391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 30312939 - 30312991
Alignment:
| Q |
50 |
ggtgatcccctgggctctcctcgtggcccaacagtggtatcagagtcgtggtt |
102 |
Q |
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| T |
30312939 |
ggtggtcccccgagctcccctcgtgacccaacagtggtatcagagttgtggtt |
30312991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 9956063 - 9956118
Alignment:
| Q |
55 |
tcccctgggctctcctcgtggcccaacagtggtatcagagtcgtggttcgacgaag |
110 |
Q |
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| T |
9956063 |
tcccctaggctctcctcgtgacccaacagtggtatcagagcctcggttcgacgaag |
9956118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 37170083 - 37170148
Alignment:
| Q |
134 |
aggttttggattaaattttggtgttcaactcacttatatggttgttctgggaccaatgtggatgat |
199 |
Q |
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| T |
37170083 |
aggttttggattaaaatatggtgtttaactcacttatgtggtttctcttggctcaatgtggatgat |
37170148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 9620682 - 9620622
Alignment:
| Q |
55 |
tcccctgggctctcctcgtggcccaacagtggtatcagagtcgtggttcgacgaagagttc |
115 |
Q |
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| T |
9620682 |
tcccccgggctcccctcgtgacccaacgatggtatcagagttgtggttcgacgaagggttc |
9620622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 39336234 - 39336175
Alignment:
| Q |
56 |
cccctgggctctcctcgtggcccaacagtggtatcagagtcgtggttcgacgaagagttc |
115 |
Q |
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| T |
39336234 |
ccccttggctcccctcgtgatccaacattggtatcagagtcgtggttcaacgaagggttc |
39336175 |
T |
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Target: scaffold0113 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 39615 - 39668
Alignment:
| Q |
62 |
ggctctcctcgtggcccaacagtggtatcagagtcgtggttcgacgaagagttc |
115 |
Q |
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| T |
39615 |
ggctcccctagtgacccaacagtggtatcagagccgaggttcgacgaagggttc |
39668 |
T |
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