View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1493_low_42 (Length: 225)

Name: NF1493_low_42
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1493_low_42
NF1493_low_42
[»] chr5 (10 HSPs)
chr5 (19-210)||(3299121-3299312)
chr5 (19-210)||(3392014-3392205)
chr5 (19-210)||(1163983-1164174)
chr5 (19-210)||(1849592-1849783)
chr5 (19-202)||(38987323-38987506)
chr5 (19-202)||(40417913-40418096)
chr5 (18-202)||(39879446-39879621)
chr5 (19-202)||(39726045-39726219)
chr5 (19-202)||(39399531-39399708)
chr5 (19-202)||(39168533-39168707)
[»] chr4 (1 HSPs)
chr4 (19-207)||(25912567-25912755)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 3299121 - 3299312
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299121 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 3299220  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||| |||||||    
T  3299221 tgccaaaatatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcat 3299312  T

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Target: chr5; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 3392014 - 3392205
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392014 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 3392113  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||| |||||||    
T  3392114 tgccaaaatatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcat 3392205  T

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Target: chr5; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 1164174 - 1163983
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1164174 aaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggt 1164075  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||| |||||||    
T  1164074 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcat 1163983  T

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Target: chr5; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 1849592 - 1849783
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1849592 aaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggt 1849691  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat 210  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  |||||| ||||||||||||| |||||||    
T  1849692 tgccagaacatttactttgcttgatccatttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcat 1849783  T

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Target: chr5; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 38987323 - 38987506
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||| ||||| ||||||||||||||  ||||||||  | || ||| ||||||||| |||||||||||||||||||||||||| || ||||||||    
T  38987323 aaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggt 38987422  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||| ||||| |||||    
T  38987423 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcac 38987506  T

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Target: chr5; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 40417913 - 40418096
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||| ||||| ||||||||||||||  ||||||||  | || ||| |||||||||||||  |||||||||||||||||||||||| ||||||||    
T  40417913 aaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggt 40418012  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||| ||||| |||||    
T  40418013 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcac 40418096  T

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Target: chr5; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 39879446 - 39879621
Alignment:
Q  18 aaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactaggg 117  Q
    ||||||||||| ||||| ||||||||||||||  ||||||||  | |  ||| ||||||||| |||||||||||||         |||| || |||||||    
T  39879446 aaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg---------tcatatgcactaggg 39879536  T
Q  118 ttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||| ||||| |||||    
T  39879537 ttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcac 39879621  T

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Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 39726045 - 39726219
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||| ||||| ||||||||||||||  ||||||||  | |  ||| ||||||||| |||||||||||||         |||| || ||||||||    
T  39726045 aaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg---------tcatatgcactagggt 39726135  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||| ||||| |||||    
T  39726136 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcac 39726219  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 39399531 - 39399708
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||| ||||| ||||||||||||||| ||||||||  | || |||||||||| |||||| |||||||||         |||| || ||||||||    
T  39399531 aaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaatattg---------tcatatgcactagggt 39399621  T
Q  119 tgccaaaacatttact---ttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac 202  Q
    |||||||| | |||||   ||||||||||||||||||||||||   | || ||||||| ||||||| |||||||||||||| |||||    
T  39399622 tgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcac 39399708  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 39168533 - 39168707
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||||||||  ||||| ||||||||| |||||||   | ||||||||||| || ||||| ||||||||| |         || || ||||||||    
T  39168533 aaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaatattgtt---------atatgcactagggt 39168623  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac 202  Q
    |||||||| | ||||||| ||||||||||||||||||||    | || ||||||| ||||| ||||||||||||||||||||||    
T  39168624 tgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcacccttcac 39168707  T

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Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 25912755 - 25912567
Alignment:
Q  19 aaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggt 118  Q
    |||||||||| ||||  ||| ||||||||||| ||||||||  | || |||||||||||||| ||  |||||||||||||||||||||||| ||||||||    
T  25912755 aaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggt 25912656  T
Q  119 tgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactcctt 207  Q
    |||||||||||||||||| |||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||||    
T  25912655 tgccaaaacatttactttacttgatccatttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgcctt 25912567  T

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