View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_43 (Length: 224)
Name: NF1493_low_43
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 6130051 - 6129827
Alignment:
| Q |
1 |
tcccttcaattttgttaagaaactttttccatcaaatctgcaaagaccattatatttttattttattactaaaa-------------agacaaaaacaat |
87 |
Q |
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| T |
6130051 |
tcccttcaattttgttaagaaactttgtccatcaaatctgcaaagaccattatatttttattttattactaaaagagaacaccaaaaagacaaaaacaat |
6129952 |
T |
|
| Q |
88 |
ttcaaatttggtgtgtacaactttttcaatatacccttgagacaattttcagtaaaataaccaatcaaactcacac--attaaaactttcaaaattatag |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6129951 |
ttcaaatttggtgtgtacaactttttcaatatacccttgagacaattttcagtaaaataaccaatcaaactcacacatattaaaactttcaaaattatag |
6129852 |
T |
|
| Q |
186 |
caaatagaaaaatacacacaacaac |
210 |
Q |
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||||||||||||||||| ||||||| |
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| T |
6129851 |
caaatagaaaaatacacgcaacaac |
6129827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 6136903 - 6136859
Alignment:
| Q |
2 |
cccttcaattttgttaagaaactttttccatcaaatctgcaaaga |
46 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
6136903 |
cccttcaattttgtcaagaaactttttccgtcaaatctgcaaaga |
6136859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 13285698 - 13285742
Alignment:
| Q |
2 |
cccttcaattttgttaagaaactttttccatcaaatctgcaaaga |
46 |
Q |
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||||| |||||||| |||||||||||||| ||||||||||||||| |
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| T |
13285698 |
cccttaaattttgtcaagaaactttttccgtcaaatctgcaaaga |
13285742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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