View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_45 (Length: 217)
Name: NF1493_low_45
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 43459486 - 43459702
Alignment:
| Q |
1 |
taaggtgattgagtttacctactagcttcaggtgcaaatccaattgtgtaatatgtaataagaacccaaactatagcctcaaaaatggaaataggaatcc |
100 |
Q |
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| T |
43459486 |
taaggtgattgagtttacctactagcttcaggtgcaaatccaattgtgtaatatgtaataagaacccaaactatagcctcaaaaatggaaataggaatcc |
43459585 |
T |
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| Q |
101 |
ttagaagaaaattagggagagtgtaagtccatggaggatgaaaaaggtgatctctatgtttgtagaacacaggaagtcttgcaattgtgagtggcaactc |
200 |
Q |
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| T |
43459586 |
ttagaagaaaattagggagagtgtaagtccatggaggatgaaaaaggtgatctctatgtttgtagaacacaggaagtcttgcaattgtgagtggcaactc |
43459685 |
T |
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| Q |
201 |
agagaaaccattgaaca |
217 |
Q |
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| T |
43459686 |
agagaaaccattgaaca |
43459702 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 4499553 - 4499481
Alignment:
| Q |
121 |
gtgtaagtccatggaggatgaaaaaggtgatctctatgtttgtagaacacaggaagtcttgcaattgtgagtg |
193 |
Q |
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| T |
4499553 |
gtgtaagtccaagcaggatggaaaaggtgatctctttgtttataaaacacaggaagcctttgaattgttagtg |
4499481 |
T |
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