View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_46 (Length: 210)
Name: NF1493_low_46
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 4826595 - 4826702
Alignment:
| Q |
5 |
ccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccacttggttgca |
104 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4826595 |
ccatgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagaccatttagtattattggctctatctctccacttgtttgca |
4826694 |
T |
|
| Q |
105 |
caccaata |
112 |
Q |
| |
|
|||||||| |
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| T |
4826695 |
caccaata |
4826702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 4856663 - 4856792
Alignment:
| Q |
1 |
ccttccatgtatttgctactagttgatgatcagt----acctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccact |
96 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
4856663 |
ccttccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccacacaacaagaccattcagtaatattggctctatctctccact |
4856762 |
T |
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| Q |
97 |
tggttgcacaccaatatggtttagctgaaaaaa |
129 |
Q |
| |
|
|| |||| |||| |||||||||||||||||| |
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|
| T |
4856763 |
tgtttgcccacc---atggtttagctgaaaaaa |
4856792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 4878398 - 4878527
Alignment:
| Q |
1 |
ccttccatgtatttgctactagttgatgatcagt----acctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccact |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
4878398 |
ccttccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccacacaacaagaccattcagtaatattggctctatctctccact |
4878497 |
T |
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| Q |
97 |
tggttgcacaccaatatggtttagctgaaaaaa |
129 |
Q |
| |
|
|| |||| |||| |||||||||||||||||| |
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| T |
4878498 |
tgtttgcccacc---atggtttagctgaaaaaa |
4878527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 4837498 - 4837587
Alignment:
| Q |
9 |
gtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccacttg |
98 |
Q |
| |
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|||||||||| | ||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
4837498 |
gtatttgctagttattgatgatcagtagctatcctttcattttccacacaacaagaccatttagtattattggctttatctctccacttg |
4837587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 4842040 - 4842138
Alignment:
| Q |
2 |
cttccatgtatttgctactagttgatgatcagtacctatcgttca----attttccacacaaaaagaccatttagtattattggctctatctctccact |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| || | |||||||| ||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
4842040 |
cttccatgtatttgctactagttgatgatcattaactatccttaatttcattttccatacagcaagaccatttagtattattggctctatctttccact |
4842138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 4846056 - 4846185
Alignment:
| Q |
3 |
ttccatgtatttgctactagttgatgatcagta----cctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccacttg |
98 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||| || |||||||||||||| ||||||||| |||| |||||||||||| |||||||||| |
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| T |
4846056 |
ttccatgtatttgcaactagttgatgattggtagctacctatcctttaattttccacacaacaagaccattcagtaatattggctctatatctccacttg |
4846155 |
T |
|
| Q |
99 |
gttgcacaccaatatggtttagctgaaaaaa |
129 |
Q |
| |
|
|||| || || ||||||||||||||||| |
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|
| T |
4846156 |
tttgccca-caccgtggtttagctgaaaaaa |
4846185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 4835390 - 4835452
Alignment:
| Q |
47 |
attttccacacaaaaagaccatttagtattattggctctatctctccacttggttgcacacca |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||| |
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|
| T |
4835390 |
attttccacacaacaagaccatttagtattattggctttatctctccgcttgtttgcacacca |
4835452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 4842950 - 4843050
Alignment:
| Q |
4 |
tccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagacca------tttagtattattggctctatctctccactt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || |||||||| |||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
4842950 |
tccatgtatttgctactagttgatgatcactaactatcctttcattttccatacaactagaccatttttttttagtattatttgctctatctctccactt |
4843049 |
T |
|
| Q |
98 |
g |
98 |
Q |
| |
|
| |
|
|
| T |
4843050 |
g |
4843050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 4868646 - 4868746
Alignment:
| Q |
4 |
tccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagacca------tttagtattattggctctatctctccactt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || |||||||| |||| |||||| |||||||||||| ||||||||||||||||| |
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|
| T |
4868646 |
tccatgtatttgctactagttgatgatcactaactatcctttcattttccatacaactagaccatttttttttagtattatttgctctatctctccactt |
4868745 |
T |
|
| Q |
98 |
g |
98 |
Q |
| |
|
| |
|
|
| T |
4868746 |
g |
4868746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 4860974 - 4861033
Alignment:
| Q |
66 |
catttagtattattggctctatctctccacttggttgcacaccaatatggtttagctgaaaaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||| |
|
|
| T |
4860974 |
catttagtattattggctctatctctccacttgtttgcgcac----atggtttacctgaaaaaa |
4861033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 4880981 - 4881040
Alignment:
| Q |
66 |
catttagtattattggctctatctctccacttggttgcacaccaatatggtttagctgaaaaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||| |
|
|
| T |
4880981 |
catttagtattattggctctatctctccacttgtttgcgcac----atggtttacctgaaaaaa |
4881040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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