View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_6 (Length: 402)
Name: NF1493_low_6
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 43459910 - 43460296
Alignment:
| Q |
1 |
agacagtgtatctcttgaaaacaagagatgctctatgtcctgttgacttgtcaaatggtagagatagttcattttgaagctgtgttccaacatggaaatg |
100 |
Q |
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| T |
43459910 |
agacagtgtatctcttgaaaacaagagatgctctatgtcctgttgacttgtcaaatggtagagatagttcattttgaagctgtgttccaacatggaaatg |
43460009 |
T |
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| Q |
101 |
tttgaaactgtttgcaaattcagttactgttatataacggtattgtatgtttctgtttgaccagtattgttcttgatctttccttgaagtaacctgtaca |
200 |
Q |
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| T |
43460010 |
tttgaaactgtttgcaaactcagttactgttatataacggtattgtatgtttctgtttgaccagtattgttcttgatctttccttgaagtaacctgtaaa |
43460109 |
T |
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| Q |
201 |
aaattaggat-aacgtatgattcgatcaacatggtataaggtttgttaagatgatgtaatgtatgatgatacctcttgcaagaaatctgcagttcctttt |
299 |
Q |
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| T |
43460110 |
aaattacgataaacgtgtgattcgatcaacatggtataaggtttgttaagatgatgtaatgtatgatgatacctcttgcaagaaatctgcagttcctttt |
43460209 |
T |
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| Q |
300 |
ctctcaggacatttaaacccacatgactcaaagaattgaaggacatggtcacgtgagccttgatatactatctgaccctctgatatt |
386 |
Q |
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| T |
43460210 |
ctctcaggacatttaaacccacatgactcaaagaattgaaggacatggtcacgtgagccttgatatactatctgaccctctgatatt |
43460296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 49770634 - 49770593
Alignment:
| Q |
156 |
tttgaccagtattgttcttgatctttccttgaagtaacctgt |
197 |
Q |
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| T |
49770634 |
tttgaccagtactgttcttgatcttttcttgaagttacctgt |
49770593 |
T |
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