View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_low_8 (Length: 395)
Name: NF1493_low_8
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_8 |
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| [»] scaffold0251 (2 HSPs) |
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Alignment Details
Target: scaffold0251 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 68 - 380
Target Start/End: Original strand, 6467 - 6775
Alignment:
| Q |
68 |
aataagttctcttaaaaagtgctaagagaacatgatcaccttaaagggagctaagttttttcgaagaacaactagaatattagtctcctcaacttggatt |
167 |
Q |
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| T |
6467 |
aataagttctcttaaaaagtgctaagagaacatgatcaccttaaagggagctaagttttttcgaagaacaactagaatattagtctcctcaacttggatt |
6566 |
T |
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| Q |
168 |
cctgtagtccaaacatatatatgtactgaatcaaaattattggctaaactaacagagcaacacctacttagaacaatcccagcaactccaacttttaacc |
267 |
Q |
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| T |
6567 |
cctgtagtccaaacatat----gtactgaaacaaaattattggctaaactaacagagcaaaaccaatttagaacaatcccagcaactccaacttttaacc |
6662 |
T |
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| Q |
268 |
gccaaatagaattgatggtaaccctgcataaaactgactttagctcctccaatagctggtactcccacacaaacaacttcttcgtcctaacaaactgtca |
367 |
Q |
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| T |
6663 |
gccaaatagaattgatggtaaccctgcataaaactgactttagctcctccaataactggtactcccacacgaacaacttcttcgtcctaacaaacagtca |
6762 |
T |
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| Q |
368 |
cacagacttgttc |
380 |
Q |
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| T |
6763 |
cacagacttgttc |
6775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4510 - 4583
Alignment:
| Q |
1 |
aagatatcttaaataaccattcgatggagaaaattcacactagtaggcatcctgtctaacaatgatgaataagt |
74 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4510 |
aagatatcttaaataacccttcgatggagaaaattcacactagtaggcatcctgtctaacaatgatgaataagt |
4583 |
T |
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