View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_low_9 (Length: 383)
Name: NF1493_low_9
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_low_9 |
 | |
|
| [»] scaffold0128 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 7327663 - 7328009
Alignment:
| Q |
7 |
attcttcaatcaccctcaataattattctatctggctccgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7327663 |
attcttcaatcaccctcaataattattctatctggctccgttt-------------actagaaaaatatctgatagattaggttgtttcgatgatttcaa |
7327749 |
T |
|
| Q |
107 |
ttatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataatagcaattttagcaaccct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7327750 |
ttatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataatagcaattttagcaatcct |
7327849 |
T |
|
| Q |
207 |
aaggttgaggtgagcatttttactttgggtgataatgtttggagaactattcaaactttagctgttttgcctcttcagatagactttgcttattggagag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7327850 |
aaggttgaggtgagcatttttactttgggtgataatgtttggaaaactattcaaactttagctgttttgcctcttcagatagactttgcttattggagag |
7327949 |
T |
|
| Q |
307 |
tttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattccta |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7327950 |
tttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattccta |
7328009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 35 - 364
Target Start/End: Complemental strand, 7311810 - 7311481
Alignment:
| Q |
35 |
tatctggctccgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||| |||||| || ||||||||||||||| ||| |
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|
| T |
7311810 |
tatctggctccgtttctggaaccccgccaccaggaaaatatctgataggttaggtagtttcgatgatttcgattatggatcgaattcttggaggttcgtg |
7311711 |
T |
|
| Q |
135 |
ttttgttatgataattcaaccaacacttataaggttgtagccttgcattataatagcaattttagcaaccctaaggttgaggtgagcatttttactttgg |
234 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| ||||||||||||||| | ||| | | || ||| |||||||||||||||||| ||||||| |
|
|
| T |
7311710 |
ttttgttatgataattcaacggactattataaggttgtggccttgcattataatggaaatgtcaacagccccgtggttgaggtgagcattttcactttgg |
7311611 |
T |
|
| Q |
235 |
gtgataatgtttggagaactattcaaactttagctgttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcac |
334 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || || ||||||||||| | || | ||||||||| | || || ||||||||||| || ||||| |
|
|
| T |
7311610 |
gtgataatgtttggagaactatacaaactttatcttttgtgcctcttcagcttctctatagctattggagaatgtatgatggtgtacaattcaactgcac |
7311511 |
T |
|
| Q |
335 |
tgttaactggttggcacgcaatcggattcc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7311510 |
ggttaactggttggcacgcaatcggattcc |
7311481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 7306731 - 7306602
Alignment:
| Q |
19 |
ccctcaataattattctatctggctccgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaa |
118 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||| ||| ||| |
|
|
| T |
7306731 |
ccctcaataattactccttctggctccgtttctggaaccccgccaccaggaaaatatctgatagatcaggctgtttcgatgatttcaattataaatcgaa |
7306632 |
T |
|
| Q |
119 |
ttcttggaggtttgtgttttgttatgataa |
148 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
7306631 |
ttcttggaggttcgtgttttgttatgataa |
7306602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 260
Target Start/End: Original strand, 20456015 - 20456230
Alignment:
| Q |
45 |
cgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatg |
144 |
Q |
| |
|
||||| |||||||| ||||| || ||||| ||||||| |||||| | ||| ||||| ||||||| | |||| ||||||| |||||||||||||| || |
|
|
| T |
20456015 |
cgtttttggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgtgttttgttttg |
20456114 |
T |
|
| Q |
145 |
ataattcaaccaacacttataaggttgtagccttgcattataatagcaatttt-agcaaccctaaggttgaggtgagcatttttactttgggtgataatg |
243 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||| ||| | | || |||| | || ||| ||||| | |||||||||||| |||||||||||||| |
|
|
| T |
20456115 |
ataattcaaccgacacatataaggttgtggccttgaattgtga-agatgttttcaaaaaacctgaggttaaaatgagcatttttagtttgggtgataatg |
20456213 |
T |
|
| Q |
244 |
tttggagaactattcaa |
260 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
20456214 |
tttggagaagtattcaa |
20456230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 20414380 - 20414508
Alignment:
| Q |
39 |
tggctccgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgtttt |
138 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| ||||||| |||||| | ||| ||| | ||||||| | |||| ||||||| |||||||||| |
|
|
| T |
20414380 |
tggctccgtttttggaacccggccaccagaaaaatttctgataaattaggatatttgcatgctgacaattatagacggaactcttggatgtttgtgtttg |
20414479 |
T |
|
| Q |
139 |
gttatgataattcaaccaacacttataag |
167 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
20414480 |
gttatgatgattcaaccaacacttataag |
20414508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 21210978 - 21210846
Alignment:
| Q |
39 |
tggctccgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgtttt |
138 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |||||||||| |||||| | ||| ||||| | ||| || || ||||| ||||||||||| |
|
|
| T |
21210978 |
tggctccatttctggaaccccgccaccagaaatatatctgataaattagggtatttgcatgatgtgtggtatacatctcgtttttggaagtttgtgtttt |
21210879 |
T |
|
| Q |
139 |
gttatgataattcaaccaacacttataaggttg |
171 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |
|
|
| T |
21210878 |
gttatgataatttaaccgacacttataaggttg |
21210846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 22525630 - 22525580
Alignment:
| Q |
128 |
gtttgtgttttgttatgataattcaaccaacacttataaggttgtagcctt |
178 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
22525630 |
gtttgtgtttggttatgataattcaaccgacacctataaagttgtagcctt |
22525580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 22534240 - 22534286
Alignment:
| Q |
132 |
gtgttttgttatgataattcaaccaacacttataaggttgtagcctt |
178 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
22534240 |
gtgtttggttatgataattcaaccgacacctataaggttgtagcctt |
22534286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 13888619 - 13888574
Alignment:
| Q |
43 |
tccgtttctggaaccccgccactagaaaaatatctgatagattagg |
88 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
13888619 |
tccgtttctggaatcccgccaccagaaaaatatctgataaattagg |
13888574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 20414570 - 20414619
Alignment:
| Q |
217 |
tgagcatttttactttgggtgataatgtttggagaactattcaaacttta |
266 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
20414570 |
tgagcatttttagtttgggtgataatgtttggagaagtattaaaagttta |
20414619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 21210803 - 21210756
Alignment:
| Q |
213 |
gaggtgagcatttttactttgggtgataatgtttggagaactattcaa |
260 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||| |||||||||| |
|
|
| T |
21210803 |
gaggtgagcatttttagtttaggtgataatatttggaaaactattcaa |
21210756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 22473684 - 22473647
Alignment:
| Q |
43 |
tccgtttctggaaccccgccactagaaaaatatctgat |
80 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |
|
|
| T |
22473684 |
tccgtttctggaacccagctactagaaaaatatctgat |
22473647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 22525544 - 22525511
Alignment:
| Q |
232 |
tgggtgataatgtttggagaactattcaaacttt |
265 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
22525544 |
tgggtgataatgtttggagaactattaaaacttt |
22525511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 21221252 - 21221220
Alignment:
| Q |
230 |
tttgggtgataatgtttggagaactattcaaac |
262 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
21221252 |
tttgagtgataatgtttggagaactattcaaac |
21221220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 22534315 - 22534347
Alignment:
| Q |
225 |
tttactttgggtgataatgtttggagaactatt |
257 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
22534315 |
tttaccttgggtgataatgtttggagaactatt |
22534347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 2910534 - 2910674
Alignment:
| Q |
39 |
tggctccgtttctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgtttt |
138 |
Q |
| |
|
||||||||||| |||||||| ||||| || | ||||||| ||| |||||| | ||| ||||| | ||||| | ||| || ||||| || |||||| |
|
|
| T |
2910534 |
tggctccgtttgtggaaccctgccacaaggacaatatctaataaattagggtttttgtatgatagcgattataattggtgtttttggaatttggtgtttg |
2910633 |
T |
|
| Q |
139 |
gttatgataattcaaccaacacttataaggttgtagccttg |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2910634 |
gttatgataattcaactcacacttataaggttgtggccttg |
2910674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 11982139 - 11982095
Alignment:
| Q |
128 |
gtttgtgttttgttatgataattcaaccaacacttataaggttgt |
172 |
Q |
| |
|
|||||||||| |||||| |||||||| | |||||||||||||||| |
|
|
| T |
11982139 |
gtttgtgtttggttatgttaattcaagcgacacttataaggttgt |
11982095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 3662 - 3705
Alignment:
| Q |
45 |
cgtttctggaaccccgccactagaaaaatatctgatagattagg |
88 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3662 |
cgtttctggaaccccgccaccagaaaaatatctgataaattagg |
3705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 23807 - 23855
Alignment:
| Q |
123 |
tggaggtttgtgttttgttatgataattcaaccaacacttataaggttg |
171 |
Q |
| |
|
|||| |||||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
23807 |
tggaagtttgtgtttggttatgagaatttaaccaacacttataaggttg |
23855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 6954904 - 6954876
Alignment:
| Q |
223 |
tttttactttgggtgataatgtttggaga |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6954904 |
tttttactttgggtgataatgtttggaga |
6954876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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