View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14940_high_18 (Length: 280)

Name: NF14940_high_18
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14940_high_18
NF14940_high_18
[»] chr3 (2 HSPs)
chr3 (10-175)||(13219260-13219425)
chr3 (10-69)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (14-174)||(238285-238445)
scaffold0002 (14-81)||(240602-240669)
[»] chr4 (1 HSPs)
chr4 (10-105)||(18176963-18177058)
[»] chr5 (3 HSPs)
chr5 (10-69)||(39047942-39048001)
chr5 (176-220)||(26702828-26702872)
chr5 (176-220)||(26972561-26972605)
[»] chr7 (1 HSPs)
chr7 (13-101)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (10-69)||(15664-15723)
[»] scaffold0014 (2 HSPs)
scaffold0014 (176-242)||(82876-82942)
scaffold0014 (176-222)||(86994-87040)
[»] chr2 (1 HSPs)
chr2 (176-237)||(18738912-18738973)
[»] chr1 (1 HSPs)
chr1 (10-55)||(39386263-39386308)
[»] chr8 (1 HSPs)
chr8 (176-220)||(9032725-9032769)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 13219260 - 13219425
Alignment:
Q  10 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13219260 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttagaagca 13219359  T
Q  110 catattcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattca 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13219360 catattcctccggggggtagattgggccgtggacataagggtctttatgacacaatcaataattca 13219425  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 13217036 - 13217095
Alignment:
Q  10 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa 69  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13217036 acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaa 13217095  T

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Target: scaffold0002 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 238445 - 238285
Alignment:
Q  14 catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacata 113  Q
    |||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| |||||  |||||||||| ||||    
T  238445 catcatttagctattgcatttatttttctcattgccggtcacatgtatcgaactaacttcggaattgggcacagtattaaagatcttttagaagcgcata 238346  T
Q  114 ttcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattc 174  Q
     ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| |||||    
T  238345 ctcctccggggggtcgattagggcgtgggcataagggcctttatgacacaatcaacaattc 238285  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 240669 - 240602
Alignment:
Q  14 catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgg 81  Q
    ||||||||||||||||| |||||||| || || || |||||||||||||| || ||||  ||||||||    
T  240669 catcatttagctattgctattcttttcctaatcgcaggtcatatgtataggaccaactggggtattgg 240602  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 18177058 - 18176963
Alignment:
Q  10 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttaga 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||||||| ||  |||||| ||| ||||||||    
T  18177058 acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga 18176963  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 39047942 - 39048001
Alignment:
Q  10 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa 69  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  39047942 acatcatcatttagctattgcaattctttttctcattaccggtcatatgtatagaactaa 39048001  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 26702872 - 26702828
Alignment:
Q  176 ctctttaatttcttatttgtgatgattccgcatttaattatacaa 220  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||    
T  26702872 ctctttaatttcttatttgtgataattccacatctaattatacaa 26702828  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 26972605 - 26972561
Alignment:
Q  176 ctctttaatttcttatttgtgatgattccgcatttaattatacaa 220  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||    
T  26972605 ctctttaatttcttatttgtgataattccacatctaattatacaa 26972561  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 14541411 - 14541323
Alignment:
Q  13 tcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattt 101  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||  | |||||| ||  |||||||||| ||||    
T  14541411 tcatcattttgctattgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatattt 14541323  T

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Target: scaffold0380 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 15664 - 15723
Alignment:
Q  10 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa 69  Q
    |||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  15664 acatcatcatctagctattgcaattctttttcacattgccagtcatatgtatagaactaa 15723  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 82876 - 82942
Alignment:
Q  176 ctctttaatttcttatttgtgatgattccgcatttaattatacaacaatcttgaggattttaattta 242  Q
    |||||||||||||||| |||||| ||| | ||  |||||||||||||||||||||||||||||||||    
T  82876 ctctttaatttcttatctgtgataattgcacacctaattatacaacaatcttgaggattttaattta 82942  T

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Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 86994 - 87040
Alignment:
Q  176 ctctttaatttcttatttgtgatgattccgcatttaattatacaaca 222  Q
    ||||||||||||||||||||||| ||||| ||  |||||||||||||    
T  86994 ctctttaatttcttatttgtgataattccacacctaattatacaaca 87040  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 18738973 - 18738912
Alignment:
Q  176 ctctttaatttcttatttgtgatgattccgcatttaattatacaacaatcttgaggatttta 237  Q
    ||||||||||||||||||| ||| ||||| ||  |||||||||||||| | |||||||||||    
T  18738973 ctctttaatttcttatttgagataattccacacctaattatacaacaaccgtgaggatttta 18738912  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 39386263 - 39386308
Alignment:
Q  10 acatcatcatttagctattgcaattctttttctcattgctggtcat 55  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||    
T  39386263 acatcatcatttagctattgtaattctttttcgcattgccggtcat 39386308  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 9032725 - 9032769
Alignment:
Q  176 ctctttaatttcttatttgtgatgattccgcatttaattatacaa 220  Q
    ||||||||||||||||||||||| ||||| ||| ||||| |||||    
T  9032725 ctctttaatttcttatttgtgataattccacatctaattttacaa 9032769  T

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