View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_high_20 (Length: 251)
Name: NF14940_high_20
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 44261727 - 44261950
Alignment:
| Q |
10 |
attatactcaatccaacaaagattaaacaatttaaatatgtcactggatgcaacaaataaaaaatcatggcattatggcatatatatggtagaaacatgg |
109 |
Q |
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| T |
44261727 |
attatactcaatccaacaaagattaaacaatttaaatatgtcactggatgcaacaaataaaaaatcatggcattatggcatatatatggtagaaacatgg |
44261826 |
T |
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| Q |
110 |
cggatataaatagnnnnnnnngtgcagaaaagtatatatgaacatatgagaagtgcaatgaataatgataaactactaaccagatgttggaggtttatgc |
209 |
Q |
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| T |
44261827 |
cggatataaatagaaaaaaaagtgcagaaaagtatatatgaacatatgagaagtgcaatgaataatgataaactactaaccagatgttggaggtttatgc |
44261926 |
T |
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| Q |
210 |
tgcgtttaaacaacatcttcacttttg |
236 |
Q |
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|||||||| |||||||||||||||| |
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| T |
44261927 |
tgcgttta---aacatcttcacttttg |
44261950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 47872343 - 47872306
Alignment:
| Q |
152 |
catatgagaagtgcaatgaataatgataaactactaac |
189 |
Q |
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| T |
47872343 |
catatgagaagtgcaatgaataatcataaactactaac |
47872306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 33857163 - 33857133
Alignment:
| Q |
16 |
ctcaatccaacaaagattaaacaatttaaat |
46 |
Q |
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| T |
33857163 |
ctcaatccaacaaagattaaacaatttaaat |
33857133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 33923760 - 33923790
Alignment:
| Q |
16 |
ctcaatccaacaaagattaaacaatttaaat |
46 |
Q |
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| T |
33923760 |
ctcaatccaacaaagattaaacaatttaaat |
33923790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 14961596 - 14961554
Alignment:
| Q |
150 |
aacatatgagaagtgcaatgaataatgataaactactaaccag |
192 |
Q |
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| T |
14961596 |
aacatatgtgaaatgcaatgaataatcataaactactaaccag |
14961554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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