View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14940_high_22 (Length: 246)

Name: NF14940_high_22
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14940_high_22
NF14940_high_22
[»] chr3 (47 HSPs)
chr3 (18-208)||(6945732-6945922)
chr3 (19-229)||(8570334-8570541)
chr3 (11-208)||(8453099-8453293)
chr3 (19-230)||(6840275-6840486)
chr3 (15-208)||(6795990-6796180)
chr3 (98-230)||(6840627-6840759)
chr3 (15-208)||(8470024-8470214)
chr3 (15-205)||(6481361-6481548)
chr3 (122-230)||(6522968-6523073)
chr3 (19-218)||(6450177-6450373)
chr3 (19-218)||(6730105-6730301)
chr3 (17-229)||(6734396-6734602)
chr3 (122-230)||(6841059-6841164)
chr3 (24-208)||(8588276-8588457)
chr3 (17-230)||(6521516-6521723)
chr3 (98-228)||(6528475-6528602)
chr3 (99-227)||(6796209-6796337)
chr3 (19-229)||(7586314-7586521)
chr3 (122-230)||(6840924-6841029)
chr3 (122-208)||(6521888-6521971)
chr3 (122-208)||(6522293-6522376)
chr3 (122-208)||(6522833-6522916)
chr3 (170-230)||(6942378-6942438)
chr3 (16-143)||(6486375-6486502)
chr3 (17-208)||(6528262-6528447)
chr3 (122-218)||(6522023-6522116)
chr3 (122-218)||(6522158-6522251)
chr3 (122-208)||(6522563-6522646)
chr3 (17-208)||(6555828-6556013)
chr3 (16-227)||(6932040-6932246)
chr3 (100-227)||(6592810-6592934)
chr3 (46-158)||(4390320-4390432)
chr3 (122-208)||(6556200-6556283)
chr3 (122-208)||(6556065-6556148)
chr3 (49-229)||(6781093-6781267)
chr3 (98-230)||(6734116-6734245)
chr3 (98-172)||(6734315-6734389)
chr3 (98-172)||(6781274-6781348)
chr3 (98-230)||(6781418-6781547)
chr3 (122-230)||(6840789-6840894)
chr3 (100-227)||(6915549-6915673)
chr3 (180-227)||(5297193-5297240)
chr3 (180-227)||(6898536-6898583)
chr3 (100-227)||(6723536-6723660)
chr3 (100-227)||(6880964-6881088)
chr3 (126-166)||(5248683-5248723)
chr3 (122-208)||(6840516-6840599)
[»] scaffold1643 (1 HSPs)
scaffold1643 (46-230)||(612-796)
[»] scaffold0958 (1 HSPs)
scaffold0958 (19-207)||(1171-1357)
[»] scaffold0425 (3 HSPs)
scaffold0425 (17-208)||(8876-9061)
scaffold0425 (98-204)||(9089-9192)
scaffold0425 (98-208)||(9224-9331)
[»] chr7 (1 HSPs)
chr7 (15-207)||(6574701-6574890)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 6945922 - 6945732
Alignment:
Q  18 gaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctg 117  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||| |||   |||  ||||||||||||||||||||||||||    
T  6945922 gaagagttttacaacaatagtacaacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggttttgtcctg 6945823  T
Q  118 aagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6945822 aaaggtttcctttgcttaaagagcttactataagaaattgtcccaaattgaaaagggccttgctgcctcaacaccttccttctttacaaaa 6945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 8570334 - 8570541
Alignment:
Q  19 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 118  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||   |||||||||||||||||||||||||||||  |||    
T  8570334 aagagttttacggcaatagttcaacaattattccgttcaggtcccttgaagttttggaatttgcatggatgaacaattgggaggaatggttttgtattga 8570433  T
Q  119 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    ||||||||||||||||||| ||||| |||||||| |||||  || ||| |||||||||   ||||||| ||||||||||||||||||||| ||| ||||     
T  8570434 agggtttcctttgcttaaaaagctttctataagatattgtcacagattgaaaagggcc---ctgcctcgacaccttccttctttacaaaaactggagatc 8570530  T
Q  219 agtgattgcaa 229  Q
    |||||||||||    
T  8570531 agtgattgcaa 8570541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 8453293 - 8453099
Alignment:
Q  11 cataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttt 110  Q
    |||||||||||||||||||| || |||||||| |||||| | ||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||     
T  8453293 cataggtgaagagttttacgacagtagttcaataaatgtgctgttcaggtctcttgaagttttgaaatttgagaagatgaacaattgggaggaatggttg 8453194  T
Q  111 tgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    |||| ||||||||||||||||||||||||||||  ||||||| | ||| ||||||| |||| | ||   |||||||||||||||||||||||||||||    
T  8453193 tgtcttgaagggtttcctttgcttaaagagctttatataagagaatgtcccaaattgaaaatgtcc---ctgcctcaacaccttccttctttacaaaa 8453099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 6840275 - 6840486
Alignment:
Q  19 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 118  Q
    |||||||||||| |||   ||| |||| |||||| || ||||| ||||||||||||| |||||||  |||||||||||||||| |||||||||||| |||    
T  6840275 aagagttttacgacaacgattcgacaattgttccatttaggtcgcttgaagttttgaaatttgagaagatgaacaattgggagaaatggttttgtcttga 6840374  T
Q  119 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    ||||||||||||||||||| || || |||||||||| ||| ||||||| |||| |||  |||||||| |||||||| ||||||||||||||||| |||||    
T  6840375 agggtttcctttgcttaaaaagatttctataagaaaatgtcccaaattgaaaaaggcagtgctgcctaaacaccttacttctttacaaaagctggagatt 6840474  T
Q  219 agtgattgcaac 230  Q
    ||| ||||||||    
T  6840475 agttattgcaac 6840486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 6795990 - 6796180
Alignment:
Q  15 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 114  Q
    |||||||| ||||||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  6795990 ggtgaagaattttacaacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggagatggacaattgggaggaatggttttgtc 6796089  T
Q  115 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
     ||||||||||||||||||||||||||||  ||||| || ||||  | |||| ||||||||    | ||||||| |||||||||||||||||||    
T  6796090 ttgaagggtttcctttgcttaaagagctttatataacaagttgtcacgaattgaaaagggc---tcagcctcaaaaccttccttctttacaaaa 6796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 6840627 - 6840759
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 197  Q
    |||| |||||||||||| ||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  6840627 ggagaaatggttttgtcttgaagggattcctttgcttaaagagatttctataagaaattgccccaaattaaaaagggccttgctacctcaacaccttcct 6840726  T
Q  198 tctttacaaaagctgaagattagtgattgcaac 230  Q
    ||||||||||| ||||||||| |||||||||||    
T  6840727 tctttacaaaaactgaagatttgtgattgcaac 6840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 8470214 - 8470024
Alignment:
Q  15 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 114  Q
    |||||||||||| | ||||| | |||||||||||||||||||  ||||||||||||||||| ||||| |  |||||||| ||||||||||||||| ||||    
T  8470214 ggtgaagagtttcatggcaacaattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggaggaatggttgtgtc 8470115  T
Q  115 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
     |||||||||||||||||||||||||||| |||||| ||  ||| || |||| | ||| || |   ||||||||||||||||||||||||||||    
T  8470114 ttgaagggtttcctttgcttaaagagctttctataaaaagctgtcccgaattgagaagcgcat---tgcctcaacaccttccttctttacaaaa 8470024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 6481361 - 6481548
Alignment:
Q  15 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 114  Q
    ||||||||||| || || |||| ||||| || || | | |||||||| ||||||||||||  |||| || ||||| | |||| |||||||||||| ||||    
T  6481361 ggtgaagagttatatggaaataattcaaaaattgatgcattcaggtctcttgaagttttggaatttcagcggatggaaaatttggaggaatggttatgtc 6481460  T
Q  115 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttaca 205  Q
     |||||||||||  | |||||||||||||||||||| | ||||| ||||||| |||||||||   || |||||||||||||||||||||||    
T  6481461 atgaagggtttctgtcgcttaaagagcttactataaaagattgtcccaaattgaaaagggcc---cttcctcaacaccttccttctttaca 6481548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 6522968 - 6523073
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 221  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||||||||||||    
T  6522968 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgaagattagt 6523064  T
Q  222 gattgcaac 230  Q
     ||||||||    
T  6523065 aattgcaac 6523073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 6450177 - 6450373
Alignment:
Q  19 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 118  Q
    ||||||| || || |||| ||||| || |||||| ||||| || |||||||| |||| |||||||  | || | ||||||||||||||||| | |  |||    
T  6450177 aagagttctatggaaataattcaataattgttccattcagatctcttgaagtattgaaatttgagcagttggagaattgggaggaatggttatttattga 6450276  T
Q  119 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    || ||||||| | ||||||||||||   |||||||||||| ||||| | |||||||||   |||||||||||||||||||||||| ||||  ||||||||    
T  6450277 agagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggcc---ctgcctcaacaccttccttctttagaaaaattgaagatt 6450373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 6730105 - 6730301
Alignment:
Q  19 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 118  Q
    ||||||| || || |||| ||||| || |||||| |||||||| |||||||| |||| |||||||    || | ||||||||||||||||| | |  |||    
T  6730105 aagagttctatggaaataattcaataattgttccattcaggtctcttgaagtattgaaatttgagcaattggagaattgggaggaatggttatttattga 6730204  T
Q  119 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    || ||||||| | ||||||||||||   |||||||||||| ||||| | |||||||||   |||||||||||||||||||||||| ||||  ||||||||    
T  6730205 agagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggcc---ctgcctcaacaccttccttctttagaaaaattgaagatt 6730301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 6734602 - 6734396
Alignment:
Q  17 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 116  Q
    |||||||||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | ||   |    
T  6734602 tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---t 6734506  T
Q  117 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 216  Q
    | | ||||||||||||||| ||||||| |||||| ||||||| | ||| | ||| |  ||   ||||||||||| |||||||||||||||||  |||| |    
T  6734505 gtaaggtttcctttgcttatagagctttctataacaaattgtcctaaactgaaaggcacc---ctgcctcaacatcttccttctttacaaaaattgaata 6734409  T
Q  217 ttagtgattgcaa 229  Q
    |||||| ||||||    
T  6734408 ttagtggttgcaa 6734396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 6841059 - 6841164
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 221  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||| ||||| |     
T  6841059 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgcagatttgg 6841155  T
Q  222 gattgcaac 230  Q
    |||||||||    
T  6841156 gattgcaac 6841164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 8588457 - 8588276
Alignment:
Q  24 ttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggt 123  Q
    |||||||| ||||  ||||||| |||||| |||||||| ||||||||||||  |||| |  ||||| ||||||||||||||||| | || | | ||||||    
T  8588457 ttttacggaaataactcaacaattgttccattcaggtctcttgaagttttggaatttaaacggatggacaattgggaggaatggatatgccttcaagggt 8588358  T
Q  124 ttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    |||||||||||||| ||||   ||||||  | ||| |  |||| |||||||| |   ||||||||||||||||||||||||||||    
T  8588357 ttcctttgcttaaaaagctatttataagtgaatgtcctgaattgaaaagggctt---tgcctcaacaccttccttctttacaaaa 8588276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 6521516 - 6521723
Alignment:
Q  17 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 116  Q
    |||||| ||||| ||||||| |||||||| |||||| |||| ||||||| ||  ||||| |||| |||  |||  ||| |||||||||||| | |||       
T  6521516 tgaagatttttatggcaataattcaacaattgttccattcaagtcccttcaatatttgagatttcaggatatggtcaactgggaggaatggatatgt--- 6521612  T
Q  117 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 216  Q
    | | |||||||| ||||||||||||||  ||||| ||||||| | ||||| |||||  ||   ||||||||||||||| |||||||||||||  ||||||    
T  6521613 gtaaggtttcctctgcttaaagagctttatataaaaaattgtcctaaattgaaaagcacc---ctgcctcaacacctttcttctttacaaaaattgaaga 6521709  T
Q  217 ttagtgattgcaac 230  Q
    | ||||||||||||    
T  6521710 tcagtgattgcaac 6521723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 6528475 - 6528602
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 197  Q
    |||||||||||| || | || || ||||||||||||||||||| || |||||| || |||| || |||| ||||||||    ||||||||||||||||||    
T  6528475 ggaggaatggttatgccttggagagtttcctttgcttaaagagatttctataacaagttgtcccgaattgaaaagggct---ctgcctcaacaccttcct 6528571  T
Q  198 tctttacaaaagctgaagattagtgattgca 228  Q
    ||||||||||| ||| |||||| ||||||||    
T  6528572 tctttacaaaaactggagattattgattgca 6528602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 6796209 - 6796337
Alignment:
Q  99 gaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcctt 198  Q
    ||||||||||| || |||| || ||||||||||||||||||| || || |||    ||||| ||| |||||||||| |||||| ||||||||||||||||    
T  6796209 gaggaatggttatgccctggagagtttcctttgcttaaagagatttctgtaaatgtttgttacaacttaaaaagggtcttgcttcctcaacaccttcctt 6796308  T
Q  199 ctttacaaaagctgaagattagtgattgc 227  Q
    ||||||| ||  |||||||| ||||||||    
T  6796309 ctttacagaaaatgaagattggtgattgc 6796337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 7586521 - 7586314
Alignment:
Q  19 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 118  Q
    |||| ||||| ||||||| ||| ||||||||||| ||||| ||||||||| || ||   |||||   ||||    | |||||||||||||    || |||    
T  7586521 aagaattttatggcaataattccacaaatgttccattcagatcccttgaaattctgcattttgattcgatgtcggaatgggaggaatggtcacatcttga 7586422  T
Q  119 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    ||||||||||||||||||||||||| |||||| ||| ||| |||| || ||||||||    |||||||||||||||||||||||||| || ||| |||||    
T  7586421 agggtttcctttgcttaaagagctttctataaaaaaatgtcccaagttgaaaagggc---tctgcctcaacaccttccttctttacagaaactggagatt 7586325  T
Q  219 agtgattgcaa 229  Q
    |  ||||||||    
T  7586324 aaagattgcaa 7586314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 6840924 - 6841029
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 221  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||  ||||| |     
T  6840924 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaatctagagatttgg 6841020  T
Q  222 gattgcaac 230  Q
    |||||||||    
T  6841021 gattgcaac 6841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6521888 - 6521971
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6521888 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6521971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6522293 - 6522376
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522293 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6522833 - 6522916
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522833 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 6942438 - 6942378
Alignment:
Q  170 aagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaac 230  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  6942438 aagggccttgctgcctcaacaccttccttctttacaaaaactgaagattggttattgcaac 6942378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 6486375 - 6486502
Alignment:
Q  16 gtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcc 115  Q
    ||||||| ||||||| ||||| |||||||| | |||| || ||||||||||||||||||||||||||   |||| |   || |||||| ||||| ||||     
T  6486375 gtgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggaggactggttatgtct 6486474  T
Q  116 tgaagggtttcctttgcttaaagagctt 143  Q
    ||| |||||||||||||| |||||||||    
T  6486475 tgatgggtttcctttgctgaaagagctt 6486502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6528262 - 6528447
Alignment:
Q  17 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 116  Q
    |||||| ||||| | ||||| |||||||| |||||| |||| ||||||| || ||| ||||||||||   |||   || |||||| ||||| | ||||      
T  6528262 tgaagatttttatgacaataattcaacaattgttccattcaagtcccttcaattttcgatatttgagaatatggtgaactgggagaaatggatatgtct- 6528360  T
Q  117 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
      | ||||||||||||||||||||||| |||||||||||||| | ||||| |||||  |||   |||||||||| |||||||||||||||||    
T  6528361 --aaggtttcctttgcttaaagagctttctataagaaattgtcctaaattgaaaagcacct---tgcctcaacagcttccttctttacaaaa 6528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 6522023 - 6522116
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||| |||||||||||||||||||||||| ||| |||||    
T  6522023 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcatcaacaccttccttctttacaaaaactggagatt 6522116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 6522158 - 6522251
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 218  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||| |||||||||||||||||||||||| ||| |||||    
T  6522158 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcatcaacaccttccttctttacaaaatctggagatt 6522251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6522563 - 6522646
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||||| || |||||| ||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522563 gtttcctttgcttaaagagatttctataacaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6555828 - 6556013
Alignment:
Q  17 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 116  Q
    |||||||||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | ||   |    
T  6555828 tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---t 6555924  T
Q  117 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    | | |||||||| ||||||||||||||  ||||  ||||||| | ||||| ||||| |   |  |||||||||| ||||| |||||||||||    
T  6555925 gtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagag---tattgcctcaacatcttccatctttacaaaa 6556013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 6932246 - 6932040
Alignment:
Q  16 gtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcc 115  Q
    ||||||| ||||||| ||||| |  ||||| | |||| || ||||||||||||||||||||||||||   |||| |   || |||||||||||| ||||     
T  6932246 gtgaagaattttacgacaataat--aacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggaggaatggttatgtct 6932149  T
Q  116 tgaagggtttcctttgcttaaagagctt-actataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaa 214  Q
    ||| |||||||||||||||| ||||||| |||  ||||   ||   | |||| ||||||||    || |||||||||||||||||||||||||| ||| |    
T  6932148 tgatgggtttcctttgcttagagagctttactc-aagaggatggctcgaattgaaaagggct---cttcctcaacaccttccttctttacaaaaactgga 6932053  T
Q  215 gattagtgattgc 227  Q
    |||||||||||||    
T  6932052 gattagtgattgc 6932040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 6592810 - 6592934
Alignment:
Q  100 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 199  Q
    |||||||||| |||| |||||| || ||||||||| ||||||||  ||||| | ||||| |||| || ||||| |||   ||||||||||||||||||||    
T  6592810 aggaatggttatgtcttgaaggtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagagcc---ctgcctcaacaccttccttc 6592906  T
Q  200 tttacaaaagctgaagattagtgattgc 227  Q
    ||| |||||  || |||||| |||||||    
T  6592907 tttgcaaaaattggagattactgattgc 6592934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 4390320 - 4390432
Alignment:
Q  46 atgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttac 145  Q
    ||||||| ||||||| ||||||| |||||  ||||||||  |||  ||||||| |||||||||| |||  |||||| || |||||||||||||||||| |    
T  4390320 atgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgcttaaagagctttc 4390419  T
Q  146 tataagaaattgt 158  Q
    |||| | ||||||    
T  4390420 tatacgtaattgt 4390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6556200 - 6556283
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||| | || ||||||||||||||  | |||| ||||||||    |||||||||||||||||||||||||||||    
T  6556200 gtttcctttgcttaaagtgttttctataagaaattgtctcgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaa 6556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6556065 - 6556148
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||||| ||   |||||||||||| || |||| ||||||||    || ||||||||||||||||||||||||||    
T  6556065 gtttcctttgcttaaagagtttttaataagaaattgtcccgaattgaaaagggc---tcttcctcaacaccttccttctttacaaaa 6556148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 6781093 - 6781267
Alignment:
Q  49 ttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactat 148  Q
    |||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | |||   | | ||||||||||||||| ||||||| ||||    
T  6781093 ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgt---gtaaggtttcctttgcttatagagctttctat 6781189  T
Q  149 aagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaa 229  Q
    || ||||||| | ||| | ||| |  ||   ||||||||||| |||||||||||||||||  |||| ||||||| ||||||    
T  6781190 aacaaattgtcctaaactgaaaggcacc---ctgcctcaacatcttccttctttacaaaaattgaatattagtggttgcaa 6781267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 6734245 - 6734116
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 197  Q
    |||||||||||| || | || || ||||||||||||||||||  || |||||   || |||||  |||| ||||||||    ||||| ||||||||||||    
T  6734245 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggct---ctgccacaacaccttcct 6734149  T
Q  198 tctttacaaaagctgaagattagtgattgcaac 230  Q
    |||||||| || ||| ||||||| |||||||||    
T  6734148 tctttacagaaactggagattagagattgcaac 6734116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 6734389 - 6734315
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaag 172  Q
    |||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||  ||||||||||||| |||||    
T  6734389 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6734315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 6781274 - 6781348
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaag 172  Q
    |||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||  ||||||||||||| |||||    
T  6781274 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6781348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 6781418 - 6781547
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 197  Q
    |||||||||||| || | || || ||||||||||||||||||  || |||||   || |||||  |||| ||||||||    ||||| ||||||||||||    
T  6781418 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggct---ctgccacaacaccttcct 6781514  T
Q  198 tctttacaaaagctgaagattagtgattgcaac 230  Q
    |||||||| || ||| ||||||| |||||||||    
T  6781515 tctttacagaaactggagattagagattgcaac 6781547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 6840789 - 6840894
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 221  Q
    ||||||||||||||||||| || |||||    ||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||  ||||| |     
T  6840789 gtttcctttgcttaaagagatttctatatccgattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaatctagagatttgg 6840885  T
Q  222 gattgcaac 230  Q
    |||||||||    
T  6840886 gattgcaac 6840894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 6915673 - 6915549
Alignment:
Q  100 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 199  Q
    |||||||||| |||| |||| | || ||||||||| ||||||||  ||||| | ||||| |||| || |||||  ||   ||||||||||||||||||||    
T  6915673 aggaatggttatgtcttgaatgtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagttcc---ctgcctcaacaccttccttc 6915577  T
Q  200 tttacaaaagctgaagattagtgattgc 227  Q
    ||| |||||  || |||||| |||||||    
T  6915576 tttgcaaaaattggagattattgattgc 6915549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 5297240 - 5297193
Alignment:
Q  180 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgc 227  Q
    ||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  5297240 ctgcctcaacatcttccttctttgcaaaaattgaagattagtgattgc 5297193  T

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Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 6898583 - 6898536
Alignment:
Q  180 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgc 227  Q
    ||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  6898583 ctgcctcaacaccttccttctttgcaaaagttgaaaattattgattgc 6898536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 6723536 - 6723660
Alignment:
Q  100 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 199  Q
    |||||||||| |||| |||||| || ||||||||  ||||||||  ||||| | ||||| |||| || |||||  ||   ||||||||||||||||||||    
T  6723536 aggaatggttatgtcttgaaggtttccctttgctacaagagctttgtataaaacattgtcccaagttgaaaagttcc---ctgcctcaacaccttccttc 6723632  T
Q  200 tttacaaaagctgaagattagtgattgc 227  Q
     || |||||  || |||||| |||||||    
T  6723633 attgcaaaaattggagattattgattgc 6723660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 6881088 - 6880964
Alignment:
Q  100 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 199  Q
    |||||||||| |||| |||||| || ||||||||| || |||||  ||||| | ||||| |||| || ||||| |||   || ||||||||||| |||||    
T  6881088 aggaatggttatgtcttgaaggtttccctttgcttcaaaagctttgtataaaacattgtcccaagttgaaaagtgcc---cttcctcaacacctcccttc 6880992  T
Q  200 tttacaaaagctgaagattagtgattgc 227  Q
    ||| |||||  || |||||| |||||||    
T  6880991 tttgcaaaaattggagattattgattgc 6880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 5248723 - 5248683
Alignment:
Q  126 cctttgcttaaagagcttactataagaaattgttccaaatt 166  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  5248723 cctttgcttaaacagctttctataagaaattgtcccaaatt 5248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 6840516 - 6840599
Alignment:
Q  122 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    ||||||||||||||||||| ||  ||||    ||||| ||||||| ||||||||    ||||| |||||||||||||||||||||||    
T  6840516 gtttcctttgcttaaagagatttatatattcgattgtcccaaattgaaaagggct---ctgccacaacaccttccttctttacaaaa 6840599  T

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Target: scaffold1643 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 796 - 612
Alignment:
Q  46 atgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttac 145  Q
    |||||||||||  ||||||||||||||||| |||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  796 atgttccgttcttgtcccttgaagttttgaaatttgagaagttgaacaattgggaggaatggttgtgtcctgaagggtttcctttgcttaaagagcttac 697  T
Q  146 tataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaac 230  Q
    ||||||||| ||| |||||||| ||||||||   ||||||||||||||||||| ||||||||| ||||| |||| ||||||||||    
T  696 tataagaaagtgtcccaaattagaaagggccactctgcctcaacaccttccttttttacaaaaactgaatattactgattgcaac 612  T

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Target: scaffold0958 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 1171 - 1357
Alignment:
Q  19 aagagttttacggcaatagttcaacaaatgttccgttcaggtcc-cttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctg 117  Q
    |||||||||| || |||| |||||||| | |||||||||||| | ||||||||||||  ||||||| |||||      ||||| ||||||| ||||| ||    
T  1171 aagagttttatggaaataattcaacaattattccgttcaggttctcttgaagttttggaatttgagtggatgctttgctgggaagaatggtattgtcttg 1270  T
Q  118 aagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaa 207  Q
    |||||||||||||||||||| | ||| |||||||| |||||  || ||| |||||||||   || |||| ||||||||||||||||||||    
T  1271 aagggtttcctttgcttaaaaatctttctataagatattgtcgcatattgaaaagggcc---ctacctcgacaccttccttctttacaaa 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 8876 - 9061
Alignment:
Q  17 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 116  Q
    |||||| ||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||| ||  |||  ||| |||||||||||| | ||   |    
T  8876 tgaagaattttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgtggatatggtcaactgggaggaatggatatg---t 8972  T
Q  117 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 208  Q
    | | |||||||| ||||||||||||||  ||||  ||||||| | ||||| |||||  ||   ||||||||||| |||||||||||||||||    
T  8973 gtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcacc---ctgcctcaacatcttccttctttacaaaa 9061  T

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Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 9089 - 9192
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 197  Q
    |||||||||||| |||| ||||||||||| ||  |||||||||||| ||||| |  ||||||| ||||| |||||||   |  |||||||||| ||||||    
T  9089 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttctatatggtattgttctaaattcaaaaggg---tattgcctcaacatcttcct 9185  T
Q  198 tctttac 204  Q
    |||||||    
T  9186 tctttac 9192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 9224 - 9331
Alignment:
Q  98 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 197  Q
    |||||||||||| || | || || ||||||||||||||| ||| || |||||   |||||| || |||| ||||||||    ||||| ||||||||||||    
T  9224 ggaggaatggttatgccttggagagtttcctttgcttaacgagttttctatatccaattgtcccgaattgaaaagggct---ctgccacaacaccttcct 9320  T
Q  198 tctttacaaaa 208  Q
    |||||||||||    
T  9321 tctttacaaaa 9331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 6574701 - 6574890
Alignment:
Q  15 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 114  Q
    ||||||||||| |||||| || ||||||||   ||||||||||||||||||||| |||||  ||||| |   |||  | | ||| ||||||||||||  |    
T  6574701 ggtgaagagttctacggcgattgttcaacattagttccgttcaggtcccttgaatttttggaatttgggaatatgcccgaatggaaggaatggttttaac 6574800  T
Q  115 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaa 207  Q
     |||| ||||||| ||||| |||||||||  ||||    ||||| ||||||| ||||||   || ||||||||| |||||| |||||| ||||    
T  6574801 ttgaacggtttcccttgctcaaagagctttatatagaccattgtcccaaattgaaaagg---ttcctgcctcaaaaccttctttctttgcaaa 6574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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