View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_high_3 (Length: 488)
Name: NF14940_high_3
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Original strand, 39446172 - 39446635
Alignment:
| Q |
9 |
aaggagcacagagaaccataacaaataccgactaatatcgaaccgacatatagagcgcccggaagtccataagcaatcactacatgaccaatgctcatgg |
108 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39446172 |
aaggaccactgagaaccataacaaataccgactaatatcgaaccgacatatagagcgcctggaagtccataagcaatcactacatgaccaatgctcatgg |
39446271 |
T |
|
| Q |
109 |
tcatcaaagtgatcaccatnnnnnnnggtcttgcccatcctcttgtgtgtaaaaaatagtccgagacataaccagctccaaaacggccaagaaaattcca |
208 |
Q |
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| T |
39446272 |
tcatcaaagtgatcaccataaaaaaaggtcttgcccatcctcttgtgtgtaaaaaatagtccgagacataaccagctccaaaacggccaagaaaattcca |
39446371 |
T |
|
| Q |
209 |
tatgctccacaaagcaaccaaagaacctgtctcaagagttgaatagccaagggattcccctatttggctcatattattaaccgttgccagccctgatccc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39446372 |
tatgctccacaaagcaaccaaagaacctgtctcaagagttgaatagccaagggattcccctatttggctcatattattaaccgttgccagccctgatccc |
39446471 |
T |
|
| Q |
309 |
attccacatgccatagaaacaaacagaatccaaaagttcaatgtgttcactgcttggaaaagatttaggtttcctccttgttgcaaagtcctttggctgt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39446472 |
attccacatgccatagaaacaaacagaatccaaaagttcaatgttttcactgcttggaaaagatttaggtttcctccttgttgcaaagtcctttggctgt |
39446571 |
T |
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| Q |
409 |
tggtatcatcagctggtaaaaggttgttggaagaatcttctcttgcaattaagttggacccttc |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39446572 |
tggtatcatcagctggtaaaaggttgttggaagaatcttctcttgcaattaagttggacccttc |
39446635 |
T |
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