View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_high_5 (Length: 451)
Name: NF14940_high_5
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 28412366 - 28412633
Alignment:
| Q |
12 |
aagaagcaacaattatccttgcattactaagatcacatacttccctttctgaaaaggaattagaacgaccaataatacttctcttttggaggtgctatta |
111 |
Q |
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| T |
28412366 |
aagaagcagcaattatccttgcattactaagatcacatacttccctttctgaaaaggaattagaacgaccaataatacttcccttttagaggtgctatta |
28412465 |
T |
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| Q |
112 |
agttacctttccttttcagacatttctatatcaataatagttgattttatatgtcttcgtttgacgggaatcttgaatttcacaagaaatttctgcacag |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28412466 |
agttgcctttccttttcagacatttctatatcaataatagttgattttatatgtcttcgtttgacgggaatcttgaatttcacaagaaatttctgcacag |
28412565 |
T |
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| Q |
212 |
ctcaagtggttgagctgagacaccctgttgagaatgaggtttagggtcccaaacaaatatgaattgcc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28412566 |
ctcaagtggttgagctgagacaccctgttgagaatgaggtttagggtcccaaacaaatatgaattgcc |
28412633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 40 - 261
Target Start/End: Original strand, 28399747 - 28399970
Alignment:
| Q |
40 |
aagatcacatacttccctttctgaaaaggaattagaacgaccaataat---acttctcttttggaggtgctattaagttacctttccttttcagacattt |
136 |
Q |
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| T |
28399747 |
aagatcacatacttccctttctgaaaagtaattaggacgaccaatcttctgatttttgactttgaggtgctactaagatatctttccttttcagacattt |
28399846 |
T |
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| Q |
137 |
ctata-tcaataatagttgattttatatgtcttcgtttgacgggaatcttgaatttcacaagaaatttctgcacagctcaagtggttgagctgagacacc |
235 |
Q |
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| T |
28399847 |
ctatactcaataatagttgattttatgtct-ttagttggaaggaaatcttgcatttcaccagaaacttctgcacagctc-agtgtttgagcggagacacc |
28399944 |
T |
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| Q |
236 |
ctgttgagaatgaggtttagggtccc |
261 |
Q |
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|||||||||||||||| |||| |||| |
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| T |
28399945 |
ctgttgagaatgaggtctaggctccc |
28399970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 28412689 - 28412792
Alignment:
| Q |
334 |
attagttgaataaaagtaaagnnnnnnnntaatttctccacactctgatcatagttttgtcccactatttagtatcgtgatttgaagactcgaggtatca |
433 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28412689 |
attagttgaataaaagtaaagaaaaaatataatttctccacactctgatcatagttttgtcccactatttagtatcgtgatttgaagactcgaggtatca |
28412788 |
T |
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| Q |
434 |
ttat |
437 |
Q |
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|||| |
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| T |
28412789 |
ttat |
28412792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 6838001 - 6837919
Alignment:
| Q |
150 |
agttgattttatatgtcttcgtttgacgggaatcttgaatttcacaagaaatttctgcacagctcaagtggttgagctgagac |
232 |
Q |
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| T |
6838001 |
agttgattttatatgtctttattggaagggaatcctgaatttcataagaaattactgcatagctcaaattgttgagctgagac |
6837919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 6837674 - 6837600
Alignment:
| Q |
363 |
taatttctccacactctgatcatagttttgtcccactatttagtatcgtgatttgaagactcgaggtatcattat |
437 |
Q |
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||||||||||| ||||||||| ||||||| ||||||| ||||| || |||||||||||||| || ||||||||| |
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| T |
6837674 |
taatttctccatactctgatcttagttttttcccactgtttagcttcctgatttgaagactcaagctatcattat |
6837600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 6838119 - 6838065
Alignment:
| Q |
30 |
ttgcattactaagatcacatacttccctttctgaaaaggaattagaacgaccaat |
84 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||| |||| || |||| |
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| T |
6838119 |
ttgcattactaagatcacatactcccctttcctaaaaggaatcagaatgatcaat |
6838065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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