View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_high_6 (Length: 432)
Name: NF14940_high_6
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 4 - 415
Target Start/End: Complemental strand, 29299334 - 29298925
Alignment:
| Q |
4 |
atctccaagaatattactatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtgtttccttgacttctcagagagg |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299334 |
atctgcaagaatattactatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtgtttccttgacttctcagagagg |
29299235 |
T |
|
| Q |
104 |
ccaccagggagaacacaaggaactggcaaccaccatttctcgtctttccttggagcaatccttcgaaacgaggctgcacgtaaacgaggcgaacttgctg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299234 |
ccaccagggagaacacaaggaactggcaaccaccatttctcgtctttcctttgagcaatccttcgaaacgaggctgcacgtaaacgaggcgaacttgctg |
29299135 |
T |
|
| Q |
204 |
atacgttctctgcataccagaattcagtatcctcaaaagaatctaatatttcctgtaaacaacattgtcatgtttatcagtcacaagaacttgatgaaaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299134 |
atacgttctctgcataccagaattcagtatcctcaaaagaatctaatatttcctgtaaacaacattgtcatgtttatcagtcacaagaacttgatgaaaa |
29299035 |
T |
|
| Q |
304 |
acttagttctcacatgaaagaagcaaatgatgtctttcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgacctt |
403 |
Q |
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||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299034 |
acttagttctcgcatgaaagaagcaaatgagg--tttcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgacctt |
29298937 |
T |
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| Q |
404 |
ggcctgcttttc |
415 |
Q |
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|||||||||||| |
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| T |
29298936 |
ggcctgcttttc |
29298925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 11475743 - 11475903
Alignment:
| Q |
20 |
ctatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtgtttccttgacttctcagagaggccaccagggagaacac |
119 |
Q |
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|||||||| ||||| ||||||||| ||||||||||||||||||| |||||||| | | || ||||||||||| |||||||||||||||| | |||||| |
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| T |
11475743 |
ctatttattgccatagctgctttatgaatttgattagcacaatctcttttctcaatcaaatgcttccttgacttatcagagaggccaccagtgtgaacac |
11475842 |
T |
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| Q |
120 |
aaggaactggcaaccaccatttctcgtctttccttggagcaatccttcgaaacgaggctgc |
180 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||| |
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| T |
11475843 |
aaggaactggcaaccaccatttctcatcttttctttgagcaataattcgaaacgagcctgc |
11475903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 11476094 - 11476159
Alignment:
| Q |
340 |
tcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttgg |
405 |
Q |
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||||||||||||||| |||||||||||||| || ||||| || || ||||||||||||| |||||| |
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| T |
11476094 |
tcttactataagcatcgtgtcaagcttctgtagagctggaaggtttatataaatatctgcccttgg |
11476159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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