View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_high_7 (Length: 403)
Name: NF14940_high_7
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 40060854 - 40061035
Alignment:
| Q |
1 |
accaccaacaatatgtcttccaagacttctgttggtggttctgctgccattgctctccgttcgttgagtctcccgttccacctgacacatcacaaaaata |
100 |
Q |
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| T |
40060854 |
accaccaacaatatgtcttccaacacttctgttggtgcttctgctgccattgctctccgttcgttgagtctcccgttccacctgacacatcacaaaaata |
40060953 |
T |
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| Q |
101 |
aaagatgaataaaggcactgcatagaataggcacacacaccaagaggtaaagagaaaatgccaaatcataccaggattttta |
182 |
Q |
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| T |
40060954 |
aaagatgaataaaggcactgcatagaataggcacacacaccaagaggtaaagagaaaatgccaaatcatactacgattttta |
40061035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 175 - 371
Target Start/End: Original strand, 40061303 - 40061495
Alignment:
| Q |
175 |
gatttttaatacaatggtcatggatgtttgatccaaacgataatattannnnnnnnaaaattaaatatatgtttttagtccttataaatattataacttt |
274 |
Q |
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| T |
40061303 |
gatttttaatacaatggtcatggatgtttgatccaaacgat----ttgttttttttttaattaaatatatatttttaatccttataaatatagtaacttt |
40061398 |
T |
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| Q |
275 |
ttgttcaagtcttttttcaatatcttactcttaacgttatttattttaataattttcctttacaattgtataattatcgtgatcatatcttgaatta |
371 |
Q |
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| T |
40061399 |
ttattcaagtcttttttcaatatcttactcttaacgttatttattttaataattttcctttacatttgtataattatcgcgatcatatattgaatta |
40061495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 42787658 - 42787696
Alignment:
| Q |
241 |
atatgtttttagtccttataaatattataactttttgtt |
279 |
Q |
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| T |
42787658 |
atatgtttttagtccttataaatatactaactttttgtt |
42787696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 29164610 - 29164646
Alignment:
| Q |
243 |
atgtttttagtccttataaatattataactttttgtt |
279 |
Q |
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|||||||| |||||||||||||| ||||||||||||| |
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| T |
29164610 |
atgtttttggtccttataaatataataactttttgtt |
29164646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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