View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14940_low_11 (Length: 359)
Name: NF14940_low_11
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 100 - 341
Target Start/End: Complemental strand, 35132747 - 35132506
Alignment:
| Q |
100 |
ggccaccaccaaaaaagaagatgtatgctattggtaacttcattgttgttgtgatcaccttgtcataataatcaggtgtaaatgaaattcctgaaaaact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35132747 |
ggccaccaccaaaaaagaagatgtatgctattggtaacttcattgttgttgtgatcaccttgtcataataatcaggtgtaaatgaaattcctgaaaaact |
35132648 |
T |
|
| Q |
200 |
atgaagaatcaaaatggggaacagttgtatttaaaaagaagttgtggattaagtgagaatttactacaaatagattagttggaaaaagcttgtgccttag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35132647 |
atgaagaatcaaaatggggaacagttgtatttaaaaagaagttgtggattaagtgagaatttactacaaatagattagttggaaaaagcttgtgccttag |
35132548 |
T |
|
| Q |
300 |
ggtgctaatcctaatgtgtattgtttcattctttagcatgtc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35132547 |
ggtgctaatcctaatgtgtattgtttcattctttagcatgtc |
35132506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35132823 - 35132747
Alignment:
| Q |
1 |
tttcattgtactcttcctgcattttcattcatctttgtttttgggtcttttttattgctgctaaaacaagatgtatg |
77 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35132823 |
tttcattgtactgttcctgcattttcattcatctttgtttttgggtcttttttactgctgctaaaacaagatgtatg |
35132747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University