View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_12 (Length: 349)
Name: NF14940_low_12
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 32147068 - 32146730
Alignment:
| Q |
14 |
cacagaccagaccaaccacaatacacacccttaggatacctcaaatttacacaagtaatgctacaatttcgatcgtcatttggacatggca---ctttgc |
110 |
Q |
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| T |
32147068 |
cacagaccagaccaaccgcaatacacacccttaggatacctcaaatttacacaagtgatactacaatttcgatcgtcatttggacatggcagcactttgc |
32146969 |
T |
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| Q |
111 |
actaatactttttgtgcagaaatgtctggttcaaaacaattgataagattttataacttggaaccaaggatggtgataccttggttttaaccttgcctaa |
210 |
Q |
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| T |
32146968 |
actaatactttttgtgaagaaatgtctggttcaaaacaattgatgagattttataacttggaaccaaggttggtgataccttggttttaaccttgcctaa |
32146869 |
T |
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| Q |
211 |
tactttttcatgtacttgatgttctcttctttgatcttgatgtctgcttgttcctaattcttcttacctgagcatttgcttgaggccaatgaaggttcca |
310 |
Q |
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| T |
32146868 |
tactttttcatgtacttgatgttctgttatttgatcttgatgtctgcttgttcctaattcttcttacctgagcatttgcttgaggccaatgaagggtcca |
32146769 |
T |
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| Q |
311 |
agcatgaggaaattatataacactattttctacctattt |
349 |
Q |
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| T |
32146768 |
agcatggggaaattatataacactattttctacctattt |
32146730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 349
Target Start/End: Complemental strand, 32155879 - 32155685
Alignment:
| Q |
164 |
taacttggaaccaaggatggtgataccttggttttaa-ccttgcctaatact----ttttcatgtacttgatgttctcttctttgatcttgatgtctg-- |
256 |
Q |
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| T |
32155879 |
taacttggaaccaaagttggtgataccttggtttttttccttgcctaatactcactttttcatgtacttgatgttctgctctttgaccttgatgcatgtc |
32155780 |
T |
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| Q |
257 |
--cttgttcctaattcttcttacctgagcatttgcttgaggccaatgaaggttccaagcatgaggaaattatataacactattttctacctattt |
349 |
Q |
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| T |
32155779 |
cacttgttcctaattcttcctacctaagcaattgctcaaggccaatgaagggtccaagcatggggaaattttataacactattttctacctattt |
32155685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 42255712 - 42255643
Alignment:
| Q |
39 |
cacccttaggatacctcaaatttacacaagtaatgctacaatttcgatcgtcatttggacatggcactttg |
109 |
Q |
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| T |
42255712 |
cacccttaagatacctcaaatttatgcaagtaacactacaactt-gctcgtcatttggacatggccctttg |
42255643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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