View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_13 (Length: 349)
Name: NF14940_low_13
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 32012212 - 32012552
Alignment:
| Q |
1 |
caatgacactacatgatgtttcatgtctgttgcatctccccatcgagggccttctcctgaaccatgaagctattgtttccaaacttgttgtggtagatat |
100 |
Q |
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| T |
32012212 |
caatgacactacatgatgtttcatgtctgttgcatctccccatcgagggccttctcctggaccatgaagttattgtttcctaacttattgtggtagatat |
32012311 |
T |
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| Q |
101 |
gatggttgagttgttatgggctaaatcggaggatgcttgagttctggatgggagtcatgaaggtgctcatgcaccttacaatttcttaagagaggagttt |
200 |
Q |
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| T |
32012312 |
gatggttgagttgttatgggctaaatcggagtatgct-gagttctagatgggtgccatgaaggtgctcatgcaccttacaatttcttaagagaggagttt |
32012410 |
T |
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| Q |
201 |
tttaatcatcttttggtagaaactgcagatgagactgagggtgatgaggatgtgatgcagcagaaccgagacttggttgttcagacatatctgctttact |
300 |
Q |
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| T |
32012411 |
tttaatcatcttttgatagcaactgcagatgaggttgagggtgatcaagatatgatgtagcagaaccgagacctggttgttcagacatatctgctttact |
32012510 |
T |
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| Q |
301 |
tggttgacatcacactcttcactaacaagagcgccacctatg |
342 |
Q |
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| T |
32012511 |
tggttgacatcacactcttcactaacaatagtgccacctatg |
32012552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7033095 - 7033161
Alignment:
| Q |
1 |
caatgacactacatgatgtttcatgtctgttgcatctccccatcgagggccttctcctgaaccatga |
67 |
Q |
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| T |
7033095 |
caatgacacttaatgatatgtcatgtttgttgcatctccccatcgagggcatgctcttggaccatga |
7033161 |
T |
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