View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_15 (Length: 329)
Name: NF14940_low_15
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 49329561 - 49329236
Alignment:
| Q |
1 |
tgtttgaacagactacacattaacaaactacataaaacaatgacaatgacaatg------------gacgtgttaacaacacactctttcatttctttgc |
88 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49329561 |
tgtttggacagactacacattaacaaactacataaaacaatgacaatgacaatgacaatgacaatggacgtgttaacaacacactctttcatttctttgc |
49329462 |
T |
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| Q |
89 |
aaaacnnnnnnnnattggttgaaattcatgcatgttttattaatttagacgtgtcatgtaatttctaatgtgaatgtaactcatgaatttcaaccaataa |
188 |
Q |
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| T |
49329461 |
aaaactttgttttattggttgaaattcatgcatgttttattaatttagacgtgtcatgtaattttcaatgtgaatgtaactcatgaatttcaaccaataa |
49329362 |
T |
|
| Q |
189 |
cataaaaaatgttacagagaaagtactagaaagtgtgttgttaacgatttgtctcgtatagaaacaactattagtgcacatacatacttattcaacaatg |
288 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49329361 |
cataaaaaatgttacagagaaagtattagaaagtgtgttgttaacgatttgcctcgtatagaaacaactattagtgcacatacatacttattcaacaatg |
49329262 |
T |
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| Q |
289 |
agacacaacctaattggaatccttag |
314 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
49329261 |
agacacaacctaattggaatccttag |
49329236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 49331566 - 49331512
Alignment:
| Q |
260 |
tagtgcacatacatacttattcaacaatgagacacaacctaattggaatccttag |
314 |
Q |
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|||||||| |||||||||| |||||||||| ||||||||||| |||||||||| |
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| T |
49331566 |
tagtgcacgtacatacttaggaaacaatgagatacaacctaatttgaatccttag |
49331512 |
T |
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