View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_17 (Length: 302)
Name: NF14940_low_17
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_17 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13219473 - 13219763
Alignment:
| Q |
1 |
ttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
100 |
Q |
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| T |
13219473 |
ttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
13219572 |
T |
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| Q |
101 |
gcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgt |
200 |
Q |
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| T |
13219573 |
gcaggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgtattggcaagaatgt |
13219672 |
T |
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| Q |
201 |
tagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgt |
291 |
Q |
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| T |
13219673 |
tagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataatgatgt |
13219763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
53 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
105 |
Q |
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| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
48 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
100 |
Q |
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| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
121 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
181 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 10996386 - 10996673
Alignment:
| Q |
1 |
ttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| |
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| T |
10996386 |
ttctttggtagctcaacacatgtactctttacctacttatgcgtttatagcgcaagactttacagctcaagctgcggtatatactcatcatcaattcatt |
10996485 |
T |
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| Q |
101 |
gcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgt |
200 |
Q |
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| T |
10996486 |
gcaggatttattatgacatgagcttttgctcatggaacgata-tttttatttgagattacaatcccgaacataatgagaataatgtattggca--gatgt |
10996582 |
T |
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| Q |
201 |
tagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgt |
291 |
Q |
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| T |
10996583 |
tagagcacaaagaagctatcatatcccatttaagttgagccatcctatttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
64 |
tactcaagctgcgttatatactcatcatcaatacattgc |
102 |
Q |
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| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 238229 - 237958
Alignment:
| Q |
8 |
gtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggct |
107 |
Q |
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| T |
238229 |
gtagctcaacatatgtactctttacctccttatgcattcatagcacaagactttactactcaagctgctttatatactcatcaccaatatattgcggggt |
238130 |
T |
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| Q |
108 |
ttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagca |
207 |
Q |
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| T |
238129 |
tcatcatgacaggggcttttgctcatggagctatttttttcattagggattacaatccggaacagaatgaggataatgtattggcaagaatgttagacca |
238030 |
T |
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| Q |
208 |
caaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgt |
279 |
Q |
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| T |
238029 |
taaagaagctatcatatctcatttaagttgggctagcctctttctaggattccataccttgggcctttatgt |
237958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
64 |
tactcaagctgcgttatatactcatcatcaatacattgc |
102 |
Q |
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|||||||||||| ||||||| |||||||||||||||||| |
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| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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