View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_18 (Length: 298)
Name: NF14940_low_18
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 35132819 - 35133096
Alignment:
| Q |
11 |
tgaaactaccagagggatgattgaagaaagcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattg |
110 |
Q |
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| T |
35132819 |
tgaaactaacagagggatgattgaagaaagcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattg |
35132918 |
T |
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| Q |
111 |
cttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatccttttgcttgtaaacacctctatagattctactg |
210 |
Q |
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| T |
35132919 |
cttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatccttttgcttgtaaacacctctatagattctactg |
35133018 |
T |
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| Q |
211 |
tgtctaccagaagcaaatttagatccaatgagcaactgagacatatctgcactccattcttcttcaccttctcctttg |
288 |
Q |
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| T |
35133019 |
tgtctaccagaagcaaatttagatccaatgagcaactgagacatatctgcactccattcttcttcaccttctcctttg |
35133096 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 266
Target Start/End: Original strand, 43933314 - 43933495
Alignment:
| Q |
85 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatccttttgct |
184 |
Q |
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||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| | | || |
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| T |
43933314 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatccatgttct |
43933413 |
T |
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| Q |
185 |
tgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaatgagcaactgagacatatctgcactcca |
266 |
Q |
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| T |
43933414 |
tatagatacctctgtagatcctgctatgtctcccagaatcaaatttggcaccaatgaataactgagacatatcagcattcca |
43933495 |
T |
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