View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_2 (Length: 604)
Name: NF14940_low_2
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 3324508 - 3323914
Alignment:
| Q |
1 |
gctattcagaagtttacgaagaatgacattgctgagcttcttaggagtggacatgattatgatgcatataaaagggtaacattctcttttcaccattaaa |
100 |
Q |
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| T |
3324508 |
gctattcagaagtttacgaagaatgacattgctgagcttcttaggagtggacatgattatgatgcatataaaagggtaatattctcttttcaccattaaa |
3324409 |
T |
|
| Q |
101 |
ttttgcatacaagtattgttgtatt--------ttatgcacatgacaataaattaaacatcggcacaaacgtcaaacacgacactgatactaacatgcag |
192 |
Q |
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| T |
3324408 |
ttttgcatacaagtattgttgtattgattcatattatgcacatgacaataaattaaatatcggcacaaacgtcaaacacgacactgatactaacatgtag |
3324309 |
T |
|
| Q |
193 |
actttagtaataatttgagaaaatagaactgattatacatgtaaaagcgttgtgtcggtgttggaacacttgtcgggcatgtgatatgcttttaatctga |
292 |
Q |
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| T |
3324308 |
acttcagtaataatttgagaaaatagaactgatta--catgtaacggcgttgtgtcggtgttggaacacttgtcggacatgtgatatacttttaatctga |
3324211 |
T |
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| Q |
293 |
agtgtcgaagctatttttgcatttgaagcagactgaagggcttctgtttgaggaaaaaatattatcctgctatgaattcattgaaaagtttattggatgc |
392 |
Q |
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| T |
3324210 |
agtgtcgaagctatttttgtatttgaagcagactgaagggcttctgtttgaggaaaaaatattatcctgctatgaattcattgaaaagtttattggatgc |
3324111 |
T |
|
| Q |
393 |
atatcagatcatcttgaagaattaattaagcagaggtgtgcttttcaattctcaaacatgaaaaaatagcatgataatcattgttttgaatagcaactaa |
492 |
Q |
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| T |
3324110 |
atatcagatcatcttgaagaattaattaagcagaggtgtgcttttcaattctcaaacatgaaaaaatagcatgataatcattgttttgaatagcaactca |
3324011 |
T |
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| Q |
493 |
aaaatcatacctcttcttatttatataatatgaactaatttcttatatagtgaatgccctgaggaatgcaaggaagctataccatcattgatgtatg |
589 |
Q |
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| T |
3324010 |
aaaatcaaacctcttcttatttatataatatgaactaatttcttatatagtgaatgccctgaggaatgcaaggaagctataccatcattgatgtatg |
3323914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 8013924 - 8013863
Alignment:
| Q |
165 |
caaacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgatt |
226 |
Q |
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| T |
8013924 |
caaacacgacactgatactaacatgtagacactagtaataatttgaaaaaatataagtgatt |
8013863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 1116368 - 1116428
Alignment:
| Q |
167 |
aacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgatta |
227 |
Q |
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||||| ||||||| ||||||||| |||| || |||||||||||||||||| ||| |||||| |
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| T |
1116368 |
aacacaacactgacactaacatgtagacattggtaataatttgagaaaattgaagtgatta |
1116428 |
T |
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