View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_4 (Length: 469)
Name: NF14940_low_4
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 40288596 - 40288318
Alignment:
| Q |
6 |
gtgaaaagaatattattggctcttatcagtttgaaagctagtagaactatcagaagtgattcaattacttttgcataaaagaaaaggaattacgtgccga |
105 |
Q |
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| T |
40288596 |
gtgaaaagaatattattagctcttatcagtttgaaagctagtagaactatcagaagtgattcaattacttttgcaaaaaagaaaaggaattacgtgccga |
40288497 |
T |
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| Q |
106 |
ctacacccttttgcactaattaaataccatgcatacatggaatatcaaagcatatgattgttctctcttaattaacttataaatactcttcatatttgac |
205 |
Q |
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| T |
40288496 |
ctacacccttttgcactaattaaatgccatgcatacatggaatatcaaagcatatgattgttctctcttaattaacttagaaatactcttcatatttgac |
40288397 |
T |
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| Q |
206 |
actatagtttgagaatcattagaaaaccaaagggttcttaaggtttaaagggtatatattttctccgatcttaaatataa |
285 |
Q |
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| T |
40288396 |
actatagtttgagaatcattagaaaaccaaagggttcttaaggcttaaagggt-tatactttctccaatctcaaatataa |
40288318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 321 - 453
Target Start/End: Complemental strand, 40288266 - 40288134
Alignment:
| Q |
321 |
gatgtatttcaatttattttatagatcagatacattatttattgaatgaattttataaaagaatatttccttacattcaatacctgaggatgtaggatct |
420 |
Q |
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| T |
40288266 |
gatgtatttcgatttattttatagatcagatacattatttattgaatgaattttataaaaaaatattttcttacattcgagattgaaggatgtaggacca |
40288167 |
T |
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| Q |
421 |
taattattgaaatgactcaaaagagttggaatg |
453 |
Q |
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| T |
40288166 |
taattattgagatgactcaaaagagttggaatg |
40288134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 5924568 - 5924535
Alignment:
| Q |
340 |
tatagatcagatacattatttattgaatgaattt |
373 |
Q |
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| T |
5924568 |
tatagattagatacattatttattgaatgaattt |
5924535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 20985172 - 20985238
Alignment:
| Q |
331 |
aatttattttatagatcagatacattatttattgaatgaattttataaaagaatatttccttacatt |
397 |
Q |
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| T |
20985172 |
aatttatattatagactagatacattatttattgaataaactttaaaaaagaatatttttttacatt |
20985238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 13873910 - 13873843
Alignment:
| Q |
332 |
atttattttatagatcagatacattatttattgaatgaattttataaaagaatatttccttacattcaa |
400 |
Q |
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| T |
13873910 |
atttatattata-atcagatacatcatttattgaatgaagcttaaaaatgaatattttcttatattcaa |
13873843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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