View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14940_low_8 (Length: 394)
Name: NF14940_low_8
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_8 |
 | |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 32146664 - 32146296
Alignment:
| Q |
4 |
acagtttgttcgattttcattttgtaggccaagaacaagaaatcatgaaaaaagaagatacgagaagaatacgggtccttggaacgaataggtgcataac |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
32146664 |
acagtttgttcgattttcattttgtaggccaagaacaagaaaacatgaaaaaggt-gatacgaaaagtatatgggtccttggaacgaataggtgcataac |
32146566 |
T |
|
| Q |
104 |
tttttnnnnnnncattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgccc |
203 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32146565 |
tttttaaaaaaacattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccaagccc |
32146466 |
T |
|
| Q |
204 |
gcctatggcgagacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgtt |
303 |
Q |
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|
|||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32146465 |
gcctatggcgag---ttggctctgaagtttgcacgccttaaatgagtatactcgcttatagcgtgtttcatcagtttcagaaatgtggaaatatcatgtt |
32146369 |
T |
|
| Q |
304 |
ttaaaaaataacttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaacatggttcaac |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
32146368 |
ttaaaaaataacttcgtttccaagtcccttaatacataccttaactctaggagtcataaaaacatggttcaac |
32146296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 116 - 365
Target Start/End: Complemental strand, 21333494 - 21333250
Alignment:
| Q |
116 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcacc-ccatgcccgcctatggcga |
214 |
Q |
| |
|
|||||||||||||||||||| | | |||| || |||||| |||||||||| ||||||| | ||||||||||||||| || ||| || ||| | || || |
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| T |
21333494 |
cattgtgaaactgagtccatgatgatactacagaaccacaggacgagtcattacattttaaaaaagttgtgcaactcgcctccaagcttgccaaaggtga |
21333395 |
T |
|
| Q |
215 |
gacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataa |
314 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| || ||| ||| |||| | | || |
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| T |
21333394 |
g---ttgactctgaagtttgcacgccttaagtgagtttactcgcttatggcgtgtttcctcaattttagaaatgt--caaaatcgtgtcttaacata-aa |
21333301 |
T |
|
| Q |
315 |
cttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaa |
365 |
Q |
| |
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||| ||||||||||| |||| | || |||||||||||||||||||||| |
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|
| T |
21333300 |
tttcaattccaagtcccctaatgcgtatcttaactctaggagtcataaaaa |
21333250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 1610 - 1439
Alignment:
| Q |
116 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcacc-ccatgcccgcctatggcga |
214 |
Q |
| |
|
|||||||||||| |||||| |||||||| || |||||| || |||||| ||||||| | ||||||||| ||||| || ||| || ||| |||| || |
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| T |
1610 |
cattgtgaaacttagtccacgacggtactacagaaccacaggccgagtcgttacattttaaaaaagttgtggaactcgcctccaagcttgccaatggtga |
1511 |
T |
|
| Q |
215 |
gacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgt |
289 |
Q |
| |
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| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
1510 |
g---ttgactctgaagtttgcacgccttaagtgagtgtactcgcttatggcgtgtttcctcagtttcagaaatgt |
1439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 15559799 - 15559636
Alignment:
| Q |
122 |
gaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttg |
221 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||| ||||||| ||| ||||||| | |||||||||| |||| ||||| || |||| ||||| || ||| |
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|
| T |
15559799 |
gaaactgagtccatgacggcactacaaaaccacaggacgaggcaatacattttgaaaaagttgtgcgactcgccccaagctcgccaatggctag---ttg |
15559703 |
T |
|
| Q |
222 |
gctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatg |
288 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
15559702 |
gctctggagtttgcacgccttaagtgagtttactcgcttacggcgtgttccatcagtttcagaaatg |
15559636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 116 - 284
Target Start/End: Complemental strand, 12058998 - 12058833
Alignment:
| Q |
116 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
215 |
Q |
| |
|
||||||||||||||| ||| |||||||| | |||||| ||||||||||| |||| || | ||||||||| |||| ||||| || | || |||||||| |
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|
| T |
12058998 |
cattgtgaaactgagctcatgacggtactttagaaccacaggacgagtcaatacatcttgaaaaagttgtgtgactcgccccaagctccccaatggcgag |
12058899 |
T |
|
| Q |
216 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcaga |
284 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12058898 |
---ttggctctggagtttgcacgccttaagtgagtttactcgcttatggcgtgttgcatcagtttcaga |
12058833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 365
Target Start/End: Original strand, 23457181 - 23457423
Alignment:
| Q |
123 |
aaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttgg |
222 |
Q |
| |
|
|||||||||||||||||| | | | |||||| |||||||||| ||||||| | |||||||| |||||| ||||| || |||| ||| ||| ||||| |
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|
| T |
23457181 |
aaactgagtccataacggcgccgtagaaccacaggacgagtcactacattttga-aaagttgtacaactcgccccaagctcgccaatgacga---gttgg |
23457276 |
T |
|
| Q |
223 |
ctctg----aagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgt-ggaaatatcatgttttaaaaaataactt |
317 |
Q |
| |
|
||||| ||||||||| | |||||||||| || |||||||| |||||||||| ||||| ||| | | |||||||||||||||||| | ||||| |
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|
| T |
23457277 |
ctctgaattaagtttgcacgtcttaagtgagcttgctcgcttacaacgtgtttcatgggtttcggaattataaaaaatatcatgttttaaaata-aactt |
23457375 |
T |
|
| Q |
318 |
cgtttccaagtcccttaatacatacattaactctaggagtcataaaaa |
365 |
Q |
| |
|
| |||||||||||| |||||| | || ||||||||||| ||||||| |
|
|
| T |
23457376 |
cttttccaagtcccacaatacacatcttgactctaggagttataaaaa |
23457423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 376
Target Start/End: Original strand, 19078 - 19332
Alignment:
| Q |
116 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
215 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||| | ||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||||| |
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|
| T |
19078 |
cattgtgaaactgagtccataacagcactgcagaaccacagaacgagtcaacaca-ttttaggaagttgtgcaactcgccccaaactcgctcatggcga- |
19175 |
T |
|
| Q |
216 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataac |
315 |
Q |
| |
|
|||||||||| ||| | || || ||||| ||||||||||||||| ||||| |||| ||||||| |||||| | ||| ||| ||||||| | | ||| |
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|
| T |
19176 |
--gttggctctggagtatacacgctttaagcgagtttactcgcttacggcgtatttcttcagtttgagaaatat--aaaaatcgtgttttatcata-aac |
19270 |
T |
|
| Q |
316 |
ttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaa-catggttcaac |
376 |
Q |
| |
|
||| || ||||| | |||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
19271 |
ttcaattacaagttctctaatgcatatcttaactctaggagtcataaaaatcatggttcaac |
19332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 376
Target Start/End: Complemental strand, 14820634 - 14820380
Alignment:
| Q |
116 |
cattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
215 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||| | ||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||||| |
|
|
| T |
14820634 |
cattgtgaaactgagtccataacagcactgcagaaccacagaacgagtcaacaca-ttttaggaagttgtgcaactcgccccaaactcgctcatggcga- |
14820537 |
T |
|
| Q |
216 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataac |
315 |
Q |
| |
|
|||||||||| ||| | || || ||||| ||||||||||||||| ||||| |||| ||||||| |||||| | ||| ||| ||||||| | | ||| |
|
|
| T |
14820536 |
--gttggctctggagtatacacgctttaagcgagtttactcgcttacggcgtatttcttcagtttgagaaatat--aaaaatcgtgttttatcata-aac |
14820442 |
T |
|
| Q |
316 |
ttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaa-catggttcaac |
376 |
Q |
| |
|
||| || ||||| | |||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
14820441 |
ttcaattacaagttctctaatgcatatcttaactctaggagtcataaaaatcatggttcaac |
14820380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 14278278 - 14278194
Alignment:
| Q |
256 |
cgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataacttcgtttccaagtcccttaatacata |
341 |
Q |
| |
|
|||||| | ||||||||||| ||||||| ||||| |||||||||||||| ||| | ||||||||||||||||||| || |||||| |
|
|
| T |
14278278 |
cgcttacgacgtgtttcatcggtttcaggaatgta-aaatatcatgtttttaaagaaaacttcgtttccaagtcccctactacata |
14278194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 7511 - 7477
Alignment:
| Q |
73 |
tacgggtccttggaacgaataggtgcataactttt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7511 |
tacgggttcttggaacgaataggtgcataactttt |
7477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 15593289 - 15593219
Alignment:
| Q |
218 |
gttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatg |
288 |
Q |
| |
|
||||||| || ||||| || || ||||| ||||||||| |||||||||||||||| | |||| |||||||| |
|
|
| T |
15593289 |
gttggctttggagtttacacgctttaagcgagtttacttgcttatggcgtgtttctttagttccagaaatg |
15593219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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