View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14940_low_9 (Length: 367)
Name: NF14940_low_9
Description: NF14940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14940_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 34649842 - 34649508
Alignment:
| Q |
20 |
agcgcgattctgaaaaatattctctattcattcaatgcatgtttgtttgtctgtcnnnnnnnactaataaagtatgtttgttgttaaacactatcaaatg |
119 |
Q |
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| T |
34649842 |
agcgcgactctgaaaaatgttctctattcattcaatgcatgtttgtttgtctgtctctttt-actaataaagtatgtttgttgttaaacactatcaaatg |
34649744 |
T |
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| Q |
120 |
agtggtaggacattcactgtannnnnnnncttcttaatcctctagtttttaaggaaataagttgtattaatttagagttttgcctgaatctagtagataa |
219 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||| |
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| T |
34649743 |
agtggtaggacattcactgtattttttttcttcttaatcctctagtttttaaggaaagaagctgtattaatttagagttttgcctgaatccaatagataa |
34649644 |
T |
|
| Q |
220 |
taaatcggggtgattaggtttcgaacactaacctccatgaaagatctcttcatagacccatagctgtatttatttatttcatatagaaaattactaaaat |
319 |
Q |
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| T |
34649643 |
taaatctggatgattaggtttcgaacactaacctccatgaaagatctcttcatagatccatagctgtatttatttatttcatatagaaaattactaaaat |
34649544 |
T |
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| Q |
320 |
acttttgatacaattttattttacacaccgtctctc |
355 |
Q |
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| T |
34649543 |
actcttgatacaattttattttacacaccatctctc |
34649508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 28467587 - 28467641
Alignment:
| Q |
300 |
atatagaaaattactaaaatacttttgatacaattttattttacacaccgtctct |
354 |
Q |
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| T |
28467587 |
atatagaaaattactaaaatactcttgatataattttattttacacgcagtctct |
28467641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 24214058 - 24214103
Alignment:
| Q |
300 |
atatagaaaattactaaaatacttttgatacaattttattttacac |
345 |
Q |
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||||||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
24214058 |
atatagaaaattattaaaatattcttgatacaattttattttacac |
24214103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 10965250 - 10965209
Alignment:
| Q |
301 |
tatagaaaattactaaaatacttttgatacaattttatttta |
342 |
Q |
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| T |
10965250 |
tatagaaaattattaaaatactctttatacaattttatttta |
10965209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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