View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_high_10 (Length: 313)
Name: NF14941_high_10
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 40130374 - 40130068
Alignment:
| Q |
1 |
caaaaacttgtatgttatattatttctttattttcaaacatgagtaaatcctcactttggtcctcgagattataaacatcgaacataaagataaatccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
40130374 |
caaaaacttgtatgttatattatttctttattttcaaacatgagtaaatcctcactttggtcctcgagtttataaacgtcgaacataaagataaatccaa |
40130275 |
T |
|
| Q |
101 |
tgtttttaaaagaaaatcaggaaagaaaaaagggattatctcaactgctttgtttaaataacataatacttgtatgaatgttacagaagtattgaaggaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130274 |
tgtttttaaaagaaaatcaggaaagaaaaaagggattatctcaactgctttgtttaaataacataatacttgtatgaatgttacagaagtattgaaggaa |
40130175 |
T |
|
| Q |
201 |
atcaattttcaggctttattcctgaagacatagggaagctgatcaacttagaaaaactgtaattcttctgaaactcccgtcttcttattgtaatcatagt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130174 |
atcaattttcaggctttattcctgaagacatagggaagctgatcaacttagaaaaactgtaattcttctgaaactcccgtcttcttattgtaatcatagt |
40130075 |
T |
|
| Q |
301 |
ctctgct |
307 |
Q |
| |
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||||||| |
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| T |
40130074 |
ctctgct |
40130068 |
T |
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