View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_high_6 (Length: 391)
Name: NF14941_high_6
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 30034335 - 30034706
Alignment:
| Q |
16 |
caaattgtggaggaatatcatgcccccctgataaaaaactcagtccacaaagctgtgaatgtgcctatccatatcaaggaatgttctacttcagaggacc |
115 |
Q |
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| T |
30034335 |
caaattgtggaggaatatcatgcccccctgataaaaaactcagtccacaaagctgtgaatgtgcctatccatatcaaggaatgttctacttcagaggacc |
30034434 |
T |
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| Q |
116 |
tttgttcagagaattgtcgaatatcactattttccattcgcttgaaatgagtttatgggtgaagttaggtttaacacctggctcagtttctttacaaaac |
215 |
Q |
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| T |
30034435 |
tttgttcagagaattgtcgaatataactattttccattcgcttgaaatgagtttatgggtgaagttaggtttaacacctggctcagtttctttacaaaac |
30034534 |
T |
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| Q |
216 |
ccatttttcaacggtgacgattatcttcaaatgcagctagcactctttccaccaacaggacaatattttaacaggacagaagttcaaagaattggatttt |
315 |
Q |
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| T |
30034535 |
ccttttttcaacggtgacgattatcttcaaatgcaactagcactctttccaccaacaggacaatattttaacaggacagaagttcaaagaattggatttt |
30034634 |
T |
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| Q |
316 |
cattgagtaatcaaacatataagcctccacacgaatttggaccctattacttcattgcatttccctatgctt |
387 |
Q |
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| T |
30034635 |
cattgagtaatcaaacatataagcctccacacgaatttggaccctattacttcattgcatttccttatgctt |
30034706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 30050341 - 30050713
Alignment:
| Q |
18 |
aattgtggaggaatat---catgcccccctgataaaaaactcagtccacaaagctgtgaatgtgcctatccatatcaaggaatgttctacttcagaggac |
114 |
Q |
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|||||||||||||||| |||| |||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
30050341 |
aattgtggaggaatattatcatgtcccctggatcaaaagctcagtccacaaagttgtgcatgtgcctatccatatcaaggaatgttgtacgttagaggac |
30050440 |
T |
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| Q |
115 |
ctttgttcagagaattgtcgaatatcactattttccattcgcttgaaatgagtttatgggtgaagttaggtttaacacctggctcagtttctttacaaaa |
214 |
Q |
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||||||| ||||||||||| ||||| |||||||||||||| ||||||| ||| ||||||| ||| || |||||||||||||| ||||||||||||||||| |
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| T |
30050441 |
ctttgtttagagaattgtctaatataactattttccattcacttgaaaagagcttatgggagaaattgggtttaacacctggttcagtttctttacaaaa |
30050540 |
T |
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| Q |
215 |
cccatttttcaacggtgacgattatcttcaaatgcagctagcactctttccaccaacaggacaatattttaacaggacagaagttcaaagaattggattt |
314 |
Q |
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||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
30050541 |
cccttttttcaatggtgatgattatcttcaaatgcaactagcactctttccaccaacaggacaatattttaataggtcagaagttcaaagatttggattt |
30050640 |
T |
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| Q |
315 |
tcattgagtaatcaaacatataagcctccacacgaatttggaccctattacttcattgcatttccctatgctt |
387 |
Q |
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| T |
30050641 |
tcattgagtaatcaaacatacaagcctccacatgaatttggaccctactacttcattgcatctccttatgctt |
30050713 |
T |
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