View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14941_high_7 (Length: 387)

Name: NF14941_high_7
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14941_high_7
NF14941_high_7
[»] chr6 (4 HSPs)
chr6 (6-375)||(6584540-6584909)
chr6 (241-377)||(6590631-6590763)
chr6 (43-77)||(6590804-6590838)
chr6 (92-136)||(6411323-6411367)
[»] chr4 (3 HSPs)
chr4 (291-375)||(21835976-21836060)
chr4 (76-123)||(21836191-21836238)
chr4 (305-343)||(51170520-51170558)
[»] chr7 (1 HSPs)
chr7 (75-150)||(10613702-10613775)
[»] chr8 (5 HSPs)
chr8 (273-343)||(234809-234876)
chr8 (273-343)||(711220-711287)
chr8 (273-343)||(748432-748499)
chr8 (273-343)||(872327-872394)
chr8 (125-173)||(8537517-8537565)
[»] chr5 (1 HSPs)
chr5 (313-371)||(37046612-37046669)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 6584909 - 6584540
Alignment:
Q  6 actcttcaacttgacaagattcatcattttacttaatgacaccattttacataatatgtagataactttcaatgtgagtcacattggtttagtgttctac 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6584909 actcttcagcttgacaagattcatcattttacttaatgacaccattttacataatatgtagataactttcaatgtgagtcacattggtttagtgttctac 6584810  T
Q  106 atgtgtcagtatgaataagcttttcaaaaatcatatataagaaaagaaaaattgaaataatcttgcaaagacaatggttttttcattaaatatttttcac 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6584809 atgtgtccgtatgaataagcttttcaaaaatcatatataagaaaagaaaaattgaaataatcttgcaaagacaatggtgttttcattaaatatttttcac 6584710  T
Q  206 acaagttgaattttgcctatatgcctcgacatatttagaagctccctgatctgagtttttctatagatagataaacacttacaagcttataaaggcttct 305  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6584709 acaagttgaattttgcctatatgcctcgacatttttagaagctccctgatctgagtttttctatagatagataaaaacttacaagcttataaaggcttct 6584610  T
Q  306 tttcaagtaaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaagctaatttaaccta 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6584609 tttcaagtaaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaaactaatttaaccta 6584540  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 6590763 - 6590631
Alignment:
Q  241 tagaagctccctgatctgagtttttctatagatagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttg 340  Q
    ||||||||||||| |||||||||||||||||| |    | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6590763 tagaagctccctggtctgagtttttctatagaca----atcacttacaaacttataaaggcttcttttcaagtaaaagaaacaaataattgtctcatttg 6590668  T
Q  341 aaaagctcttgaaagctagaagctaatttaacctatg 377  Q
    ||||||||||||||| | ||| ||| |||||||||||    
T  6590667 aaaagctcttgaaagatggaaactattttaacctatg 6590631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 6590838 - 6590804
Alignment:
Q  43 gacaccattttacataatatgtagataactttcaa 77  Q
    |||||||||||||||||||||||||||||||||||    
T  6590838 gacaccattttacataatatgtagataactttcaa 6590804  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 6411323 - 6411367
Alignment:
Q  92 gtttagtgttctacatgtgtcagtatgaataagcttttcaaaaat 136  Q
    ||||||||||||||||| ||| |||||||||| |||||| |||||    
T  6411323 gtttagtgttctacatgagtcggtatgaataaacttttcgaaaat 6411367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 21836060 - 21835976
Alignment:
Q  291 cttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaagctaatttaaccta 375  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||   ||| ||||| ||| |||||||||    
T  21836060 cttataaaggcctcttttcaagtaaaagaaacagataattgtctcatttgagaagctctcataagatagaatctattttaaccta 21835976  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 21836238 - 21836191
Alignment:
Q  76 aatgtgagtcacattggtttagtgttctacatgtgtcagtatgaataa 123  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21836238 aatgtgagtcacattggtttagtgttctacatgagtcagtacgaataa 21836191  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 51170558 - 51170520
Alignment:
Q  305 ttttcaagtaaaagtaacaaataattgtctcatttgaaa 343  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  51170558 ttttcaagtaaaagaaacaaataattgtctcaattgaaa 51170520  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 10613702 - 10613775
Alignment:
Q  75 caatgtgagtcacattggtttagtgttctacatgtgtcagtatgaataagcttttcaaaaatcatatataagaaaa 150  Q
    ||||||||||||||| |||||||||||||||  ||  |||||| ||||| |||||| |||||||||||||||||||    
T  10613702 caatgtgagtcacataggtttagtgttctactagt--cagtataaataaacttttcgaaaatcatatataagaaaa 10613775  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 234809 - 234876
Alignment:
Q  273 tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa 343  Q
    ||||||||||| || || |||||||| ||||   |||||||||||| ||||||||||||||||| ||||||    
T  234809 tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa 234876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 711220 - 711287
Alignment:
Q  273 tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa 343  Q
    ||||||||||| || || |||||||| ||||   |||||||||||| ||||||||||||||||| ||||||    
T  711220 tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa 711287  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 748432 - 748499
Alignment:
Q  273 tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa 343  Q
    ||||||||||| || || |||||||| ||||   |||||||||||| ||||||||||||||||| ||||||    
T  748432 tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa 748499  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 872327 - 872394
Alignment:
Q  273 tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa 343  Q
    ||||||||||| || || |||||||| ||||   |||||||||||| ||||||||||||||||| ||||||    
T  872327 tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa 872394  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 8537517 - 8537565
Alignment:
Q  125 cttttcaaaaatcatatataagaaaagaaaaattgaaataatcttgcaa 173  Q
    |||||| ||||||| ||||| |||||||||||||||||  |||||||||    
T  8537517 cttttcgaaaatcacatataggaaaagaaaaattgaaacgatcttgcaa 8537565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 37046669 - 37046612
Alignment:
Q  313 taaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaagctaatttaa 371  Q
    |||||| || |||||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  37046669 taaaagaaaaaaataattgtatcatttgagaagctcttgaaagct-gaaactaatttaa 37046612  T

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