View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_low_1 (Length: 693)
Name: NF14941_low_1
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Complemental strand, 6075865 - 6075295
Alignment:
| Q |
11 |
cataggtatttatcgtagtcacaacaacgcaaacagcacgattttgacaagttggtaaagagttagcgttggaaccctaaactcattccaattaaggaaa |
110 |
Q |
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| T |
6075865 |
cataggtatttatcgtagtcacaacaacgcaaacagcacgattttgacaagttggtaaagagttagcgttggaaccctaaactcattccaattaaggaaa |
6075766 |
T |
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| Q |
111 |
aacaatgtacccaaaaggtccatcacattcaacatcaaaccttaataaagaaataacctcgtgaaatatttatcaccacacaaattcttacttgttttgt |
210 |
Q |
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| T |
6075765 |
aacaatgtacccaaaaagtccatcacattcaacatcaaaccttaataaagaaataacctcgtgaaatatttatcaccacacaaattcttacttgttttgt |
6075666 |
T |
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| Q |
211 |
acaaagtaggtttccatctctctcagtctctctatcattatttaggcctcactaagataagagtccttgacaagacaccaacttctttcttttttggcga |
310 |
Q |
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| T |
6075665 |
acaaagtaggtttccatctctctcagtctctctatcattatttaggcctcacttagataagagtccttgacaagacaccaacttctttcttttttggcga |
6075566 |
T |
|
| Q |
311 |
ttataatcggttacaaaactgagcaagattcttcctattcccattattagtagctcttaaccctctctgtttggcattggcccaaatggaaataaaacat |
410 |
Q |
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| T |
6075565 |
ttataatcggttacaaaactgagcaagattcttcctattcccattattagtagctcttaaccctctctgtttggcattggcccaaatggaaataaaacat |
6075466 |
T |
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| Q |
411 |
gtttgctcttcaatattaggcaactttgacaagtgttgcagcgccggccccgacctcggcccgggcctttatcagaatcgaatcctctaccgtagtggta |
510 |
Q |
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| T |
6075465 |
gtttgctcttcaatattaggcaactttgacaagtgttgcagcgccggccccgacctcggcccgggcctttatcagaatcgaatcctctaccgtagtggta |
6075366 |
T |
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| Q |
511 |
tgatatggtagccgtgagttgagtcgatcctctcaatttctcaaaagaaacggacatatccattaccatag |
581 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
6075365 |
tgatatggtagctgtgagttgagtcgatcctctcaatttttcaaaagaaacggagatatccattaccatag |
6075295 |
T |
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