View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14941_low_12 (Length: 302)
Name: NF14941_low_12
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 3638017 - 3638295
Alignment:
| Q |
9 |
agcagcacagataaaattccaattacttgcttcagctttggaacattgatgactgcaactttagaatgggaaggtatacctgcatatgttattggaatag |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3638017 |
agcatcactgataaaattccaattacttgcttcagctttggaacattgatgactgcaactttagaatgggaaggtatacctgcatatgttattggaatag |
3638116 |
T |
|
| Q |
109 |
cacgaggaataagcgctgtaattggaatagctgcaacagttttatatcctgttctacaatatcagatttcagctattagaactggactctggtctatttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3638117 |
cacgaggaataagcgctgtaattggaatagctgcaacagttttatatcctgttctacaatatcagatttcagctattagaactggactctggtctatttg |
3638216 |
T |
|
| Q |
209 |
gtctcaggtacaaactcacaaatgatctggatcgcaatatcgaagttttagatgtctctgcgatttatacatgtttatg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3638217 |
gtctcaggtacaaactcacaaatgatctggatcgcaacatcgaagttttagatgtctctgcgatttatacatgtttatg |
3638295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 3646893 - 3647109
Alignment:
| Q |
18 |
gataaaattccaattacttgcttcagctttggaacattgatgactgcaactttagaatgggaaggtatacctgcatatgttattggaatagcacgaggaa |
117 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3646893 |
gataaagtttcaattacttgtttcagctttggaactttgatgacagctactttagaatgggaaggtatacctgcatatgttattggaatagcacgaggaa |
3646992 |
T |
|
| Q |
118 |
taagcgctgtaattggaatagctgcaacagttttatatcctgttctacaatatcagatttcagctattagaactggactctggtctatttggtctcaggt |
217 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3646993 |
taagcgctgcaatcggaatagctgcaacagttttatatcctgttctagagtatcatatgtcagctattagaactggactttggtctatctggtctcaggt |
3647092 |
T |
|
| Q |
218 |
acaaactcacaaatgat |
234 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
3647093 |
acaaacctacaaatgat |
3647109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University