View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_low_14 (Length: 231)
Name: NF14941_low_14
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 40666735 - 40666535
Alignment:
| Q |
16 |
acagacagcaaaaaaggaatgacccattgactgatcaagtaatcaactaatgatttctaaatacaggagtcgtataaaaaa-ctaacagtttcgcgtaga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
40666735 |
acagacagcaaaaaaggaatgacccattgactgatcaagtaatcaactaatgatttctaaatataggagtcgtataaaaaaactaacagtttcgcgtaga |
40666636 |
T |
|
| Q |
115 |
gctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666635 |
gctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaa |
40666536 |
T |
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| Q |
215 |
t |
215 |
Q |
| |
|
| |
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|
| T |
40666535 |
t |
40666535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 40723270 - 40723471
Alignment:
| Q |
16 |
acagacagcaaaaaaggaatgacccattgactgatcaagtaatcaactaatgatttctaaatacaggagtcgtataaaaaac--taacagtttcgcgtag |
113 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | | ||||| |||||||||| ||||| |
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| T |
40723270 |
acagacaacaaaaaaggaatgactcattgactgatcaagtaatcaactaatgatttctaaatataggagtcggaaagaaaacactaacagtttcacgtag |
40723369 |
T |
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| Q |
114 |
agctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtca |
213 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723370 |
agctgatgggttgcttgttccaagtgcggtatggaaatgctcatttgtaactgccatagaatttagtatttcagcatcaatagtctcatcctctaagtca |
40723469 |
T |
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| Q |
214 |
at |
215 |
Q |
| |
|
|| |
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| T |
40723470 |
at |
40723471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 41092395 - 41092462
Alignment:
| Q |
148 |
aaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaat |
215 |
Q |
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|||||||||||||| ||||||||||| || | ||||||||||||||| |||||||| || |||||||| |
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| T |
41092395 |
aaatgctcatttgtcactgccatggagttcaatatttcagcatcaattgtctcatcttccaagtcaat |
41092462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 27977951 - 27977839
Alignment:
| Q |
103 |
gtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcat |
202 |
Q |
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||||| || ||||| || || ||||||| ||||||||| ||| ||||| |||||||| || ||||| || || ||||| ||||||||||| || |||| |
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| T |
27977951 |
gtttcacggagagcagaaggattgcttgatccaagtgcggtactgaaatgttcatttgtgaccgccattgagttaagtatctcagcatcaatggtttcat |
27977852 |
T |
|
| Q |
203 |
cctctaagtcaat |
215 |
Q |
| |
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| |||| |||||| |
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|
| T |
27977851 |
cttctaggtcaat |
27977839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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