View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_low_3 (Length: 471)
Name: NF14941_low_3
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 46230411 - 46229969
Alignment:
| Q |
1 |
aaatggctatccttcatacttctcttagatcccttctccctcttcacttcatcaaggtgaaatatatcatatctattttaatcattaattaaagttttct |
100 |
Q |
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| T |
46230411 |
aaatggctacccttcatacttctcttagatcccttctccctcttcacttcatcaaggtgaaatatatcatatctattttaatcattaattaaagttttct |
46230312 |
T |
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| Q |
101 |
agctaggttatattctattataactttagggttatttattgtttctctaacagggaaaacgttctttatctgatcaaatgaatgaagcagtgaattacat |
200 |
Q |
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| T |
46230311 |
agctaggttat------------ctttagggttatttattgtttctctaacagggaaaacgttctttatctgatcaaatgaatgaggcagtgaattacat |
46230224 |
T |
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| Q |
201 |
aaatcacttgaagaagaatatgaaagaactaagttacaaaagggatgaactgaaaaaactctctaatcctagtcttaaaaataaaagccatgtttcttgt |
300 |
Q |
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| T |
46230223 |
aaatcacttgaagaagaatatgaaagaactaagttacaaaagggatgaactgaaaaaactctctaatcctagtcttaaaaataaaagccatgtttcttgt |
46230124 |
T |
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| Q |
301 |
agtttcactatccacaagaataatagaactgtgggaattgaaatcagtactaaaactggctttatagaggaaggtgccccactttctaaatttctggaac |
400 |
Q |
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| T |
46230123 |
agtttcactatccacaagaataatagaactgtgggaattgaaatcagtactaaaactggctttatagaggaaggtgccccactttctaaatttctggaac |
46230024 |
T |
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| Q |
401 |
aactgatgagatatggacttgatgttgttagctgcttttctattcaagtcaatgg |
455 |
Q |
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| T |
46230023 |
aactgatgagatatggacttgatgttgttagctgcttttctattcaagtcaatgg |
46229969 |
T |
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Back To:
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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 220012 - 220125
Alignment:
| Q |
150 |
acagggaaaacgttctttatctgatcaaatgaatgaagcagtgaattacataaatcacttgaagaagaatatgaaagaactaagttacaaaagggatgaa |
249 |
Q |
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||||||||| || || |||||||||| ||||| || ||||||||||||||||| ||| || | || ||||| || ||||| || ||| || |||||| |
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| T |
220012 |
acagggaaagcgatcaatatctgatcatatgaacgaggcagtgaattacataaaacacatgcaaaataatatcaatgaacttggtaccaagagagatgaa |
220111 |
T |
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| Q |
250 |
ctgaaaaaactctc |
263 |
Q |
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| T |
220112 |
ctcaaaaaactctc |
220125 |
T |
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