View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14941_low_4 (Length: 423)
Name: NF14941_low_4
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 10331094 - 10331367
Alignment:
| Q |
17 |
aaaaatatgtggggaaatat--atatcaagagtactcttccatcgatatcacttcacagcagtagtctcaatcgaaggtatggaattataagcatagtca |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10331094 |
aaaaatatgtggggaaatatatatatcaagagtactcttccatcgatatcactccacagcagtagtctcaatcgaaggtatggaattataagcatagtca |
10331193 |
T |
|
| Q |
115 |
agtgacaaaggactaaaccgannnnnnnnnnnngttgaataggactaaaccaaattatccattatgaaacaagataatagaatatcttatactatctatt |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10331194 |
agtgacaaaggactaaaccgatttttattttttgttgaataggactaaaccaaattatccattatgaaacaagataatagaatatcttatactatctatt |
10331293 |
T |
|
| Q |
215 |
agaaagtatttattcga--nnnnnnnnaaaggattcggtcgatataatggattgttgggatatttgatatgttg |
286 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
10331294 |
agaaagtatttattcaatttttttttgaaaggattcagtcgatgtaatgggttgttgggatatttgatatgttg |
10331367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 324 - 414
Target Start/End: Original strand, 10331382 - 10331472
Alignment:
| Q |
324 |
ttgataagacgtaattctccacttctcagccttagtatttttatttatgacaagcaaaaagaccatctttcagcattttctaatagatttt |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10331382 |
ttgataagacgttattctccacttctcagtcttagtatttttatttatgacaagcaaaaagaccatctttcagcattttctaatatatttt |
10331472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University