View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_low_5 (Length: 400)
Name: NF14941_low_5
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 5684255 - 5684631
Alignment:
| Q |
10 |
agcagcacagacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaaccctccaattttccactatcta |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684255 |
agcaacacaaacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaaccctccaattttccactatcta |
5684354 |
T |
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| Q |
110 |
catttcccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684355 |
catttcccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcct |
5684454 |
T |
|
| Q |
210 |
cattctctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctcttcacgttctcgcagttgcaatagacccaacaaaagactt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684455 |
cattctctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctcttcacgttctcgcagttgcaatagacccaacaaaagactt |
5684554 |
T |
|
| Q |
310 |
ccctagaaataacaatcctcaacgacttctaaaagaactagcagaacgcnnnnnnntcactaacccaaaatcaaaat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5684555 |
ccctagaaataacaatcctcaacgacttctaaaagaactagcagaacgcaaaaaaatcactaacccaaaatcaaaat |
5684631 |
T |
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